BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37390.1 Length=1229 Score E Sequences producing significant alignments: (Bits) Value Ahg482762 jgi|Araly1|482762|fgenesh2_kg.4__1822__AT2G37390.1 1267 0.0 Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257 1127 0.0 > Ahg482762 jgi|Araly1|482762|fgenesh2_kg.4__1822__AT2G37390.1 Length=1090 Score = 1267 bits (686), Expect = 0.0 Identities = 809/868 (93%), Gaps = 10/868 (1%) Strand=Plus/Plus Query 6 ATTTCTTTCAAGTTCTAACAAAAGTTTGGt-tttttt-tttttCTTTCTTATTATCACTT 63 |||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||| Sbjct 1 ATTTCTTTCAAGTTCTAACAAAAGTTTGGTGTTTTTTACTTTGGTTTCTTACTATCACTT 60 Query 64 CTTCA--CTCTCTTTCTCCATATAATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCG 121 ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 61 CTTCACTCTCTCTTTCTCCATATAATGAAGGGTCGTATGTTTTGCGCTTCGCAAGCATCA 120 Query 122 ACAGCCATATGTTCAAGCATGGACCACGTTCACAAATCAACCACCACCGACGAAGATGAA 181 ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 121 ACAGCCATATGTTCAAGCATGGATCACGTTCACAAATCAACCACCACCGAAGACGATGAA 180 Query 182 CGAAACAGCGGCCGAGCTATAGACCGCCACAACCCGATCATTAAAGATGGCCGAAGATCA 241 | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 CCAAGTAGCGGCCGAGCTATAGACCGCCACAATCCGATCATTAAAGATGGCCGAAGATCA 240 Query 242 TTCGCTGACGACTTCATTAAACTACCAACTTC-CGCAGAAGACGGAGAGATGAGTAACAA 300 ||||| || |||||||||||||||||| |||| || | ||||||||||||||||||||| Sbjct 241 TTCGCCGAGGACTTCATTAAACTACCAGCTTCTGGC-GGAGACGGAGAGATGAGTAACAA 299 Query 301 AAAGCTAGAGATCTATAAAGGCAGGAGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGG 360 ||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||| Sbjct 300 AAAACTAGAGATCTATAAAGGCAGGATAAGCATTACTGGCCGGAGAAGCACGGGTGGTGG 359 Query 361 CGGTGGAGGCGGAGCAGCGGCGTTGTTGAAGCTGATCACTAATGACATTGGCTTAGCAAG 420 ||| ||||||||||||||||||||||||||||| || || |||||||||||| |||| || Sbjct 360 CGGGGGAGGCGGAGCAGCGGCGTTGTTGAAGCTTATTACCAATGACATTGGCCTAGCGAG 419 Query 421 GAAGAGTTTCAGCTGTGTTGCGAGACCCGCATGTGACTTAATCAAAACCCCTGTGGGTTC 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 420 GAAGAGTTTCAGCTGTGTTGCGAGACCAGCATGTGACTTAATCAAAACCCCTGTGGGTTC 479 Query 481 TACAAGGTATCTTTTGGGATCGGACCCGGATTCTA-TTACGGGTTCT-GTGGATCAGGAT 538 ||||||||||||||||| ||| ||||||||||||| || |||| ||| || || |||| Sbjct 480 TACAAGGTATCTTTTGGAATCCGACCCGGATTCTATTTCCGGG-TCTACAGG-TCGGGAT 537 Query 539 CCGGCTAAGACGGTAGAAGCTGAAGCTCCTGCTGGTGAAGACAAAACGTTGACAGAGAAG 598 |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| Sbjct 538 CCGGCTAAGACGGTAGAAACTGAAGCTCCTGCTGGTGAAGACATAACGTTGACGGAGAAG 597 Query 599 AAGACAACTTGTGGTGATACAGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 658 |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 598 AAGACAACTTGTGGTGGTTCGGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 657 Query 659 AGAGGCTGTGAAGGCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 718 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 AGAGGCTGTGAAGCCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 717 Query 719 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATA 778 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 718 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACCGGAGATATCACTCCCTTGGAAATA 777 Query 779 TTGGATAGCATTTCAAAGGTTAAAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAG 838 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 778 TTGGATAGCATCTCAAAGGTTAAAAATGCCCAATTTTGGACAACTCCAACAATCCCAAAG 837 Query 839 CCGAACGTGGAAACACAAAATCCCTAAT 866 |||||||| ||||| ||||||||||||| Sbjct 838 CCGAACGTAGAAACCCAAAATCCCTAAT 865 > Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257 Length=780 Score = 1127 bits (610), Expect = 0.0 Identities = 727/783 (93%), Gaps = 10/783 (1%) Strand=Plus/Plus Query 86 ATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCGACAGCCATATGTTCAAGCATGGAC 145 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGAAGGGACGTATGTTTTGCGCTTCGCAAGCATCAACAGCCATATGTTCAAGCATGGAC 60 Query 146 CACGTTCACAAATCAACCACCACCGACGAAGATGAACGAAACAGCGGCCGAGCTATAGAC 205 |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 61 CACGTTCACAAATCAACCACCACCGAAGAAGATGAACGAAGTAGCGGCCGAGCTATAGAC 120 Query 206 CGCCACAACCCGATCATTAAAGATGGCCGAAGATCATTCGCTGACGACTTCATTAAACTA 265 |||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||| Sbjct 121 CGCCACAATCCGATCATTAAAGATGGCCGAAGATCATTCGCCGAGGACTTCATCAAACTA 180 Query 266 CCAACTTCCGCAGAAGACGGAGAGATGAGTAACAAAAAGCTAGAGATCTATAAAGGCAGG 325 ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 CCAGCTTCCGCCGAAGACGGAGAGATGAGTAACAAAAAACTAGAGATCTATAAAGGCAGG 240 Query 326 AGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGGCGGTGGAGGCGGAGCAGCGGCGTTG 385 |||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 241 AGAAGCATTACTGGCCGGAGAAGCACGGGTGGTGGCGGGGGAGGCGGAGCAGCGGCGTTG 300 Query 386 TTGAAGCTGATCACTAATGACATTGGCTTAGCAAGGAAGAGTTTCAGCTGTGTTGCGAGA 445 |||||||| || || |||||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 301 TTGAAGCTTATTACCAATGACATTGGCCTAGCGAGGAAGAGTTTCAGCTGTGTTGCTAGA 360 Query 446 CCCGCATGTGACTTAATCAAAACCCCTGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 505 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 361 CCCGCTTGTGACTTAATCAAAACCCATGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 420 Query 506 CCGGATTCTATTAC-GGGTTCTGTGGATCAGGATCCGGCTAAGACGGTAGAAGCTGAAGC 564 |||||||||||| | ||| ||| || ||||| |||||||| |||||||||||||||||| Sbjct 421 CCGGATTCTATTTCTGGG-TCTCCGGGTCAGGTTCCGGCTATGACGGTAGAAGCTGAAGC 479 Query 565 TCCTGCTGGTGAAGACAAAACGTTGACAGAGAAGAAGACA-ACTTGTGGT-G-A-TACAG 620 |||||||||||||| || ||||||||| | | |||||| | ||||||| | | | | | | Sbjct 480 TCCTGCTGGTGAAGGCATAACGTTGAC-G-G-AGAAGA-ATACTTGTGTTGGTAGTTCGG 535 Query 621 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 595 Query 681 GGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTCAACATAGATTTTGCTGCAAAGA 740 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 596 GGAAACACTTGGCCAGAATGCAAGGTGTGACATCCTTCAACATAGATTTTGCTGCAAAGA 655 Query 741 AAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGATAGCATTTCAAAGGTTA 800 | || |||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 656 AGGTAACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGAAAGTATCTCAAAGGTTA 715 Query 801 AAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAGCCGAACGTGGAAACACAAAATC 860 ||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||| Sbjct 716 AAAATGCCCAATTTTGGACAACTCCAACATTCCCAAAGCCAAACGTGGAAACCCAAAATC 775 Query 861 CCT 863 ||| Sbjct 776 CCT 778 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45899992068 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5