BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37390.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482762 jgi|Araly1|482762|fgenesh2_kg.4__1822__AT2G37390.1 1267 0.0
Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257 1127 0.0
> Ahg482762 jgi|Araly1|482762|fgenesh2_kg.4__1822__AT2G37390.1
Length=1090
Score = 1267 bits (686), Expect = 0.0
Identities = 809/868 (93%), Gaps = 10/868 (1%)
Strand=Plus/Plus
Query 6 ATTTCTTTCAAGTTCTAACAAAAGTTTGGt-tttttt-tttttCTTTCTTATTATCACTT 63
|||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct 1 ATTTCTTTCAAGTTCTAACAAAAGTTTGGTGTTTTTTACTTTGGTTTCTTACTATCACTT 60
Query 64 CTTCA--CTCTCTTTCTCCATATAATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCG 121
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 CTTCACTCTCTCTTTCTCCATATAATGAAGGGTCGTATGTTTTGCGCTTCGCAAGCATCA 120
Query 122 ACAGCCATATGTTCAAGCATGGACCACGTTCACAAATCAACCACCACCGACGAAGATGAA 181
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 121 ACAGCCATATGTTCAAGCATGGATCACGTTCACAAATCAACCACCACCGAAGACGATGAA 180
Query 182 CGAAACAGCGGCCGAGCTATAGACCGCCACAACCCGATCATTAAAGATGGCCGAAGATCA 241
| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CCAAGTAGCGGCCGAGCTATAGACCGCCACAATCCGATCATTAAAGATGGCCGAAGATCA 240
Query 242 TTCGCTGACGACTTCATTAAACTACCAACTTC-CGCAGAAGACGGAGAGATGAGTAACAA 300
||||| || |||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 241 TTCGCCGAGGACTTCATTAAACTACCAGCTTCTGGC-GGAGACGGAGAGATGAGTAACAA 299
Query 301 AAAGCTAGAGATCTATAAAGGCAGGAGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGG 360
||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||
Sbjct 300 AAAACTAGAGATCTATAAAGGCAGGATAAGCATTACTGGCCGGAGAAGCACGGGTGGTGG 359
Query 361 CGGTGGAGGCGGAGCAGCGGCGTTGTTGAAGCTGATCACTAATGACATTGGCTTAGCAAG 420
||| ||||||||||||||||||||||||||||| || || |||||||||||| |||| ||
Sbjct 360 CGGGGGAGGCGGAGCAGCGGCGTTGTTGAAGCTTATTACCAATGACATTGGCCTAGCGAG 419
Query 421 GAAGAGTTTCAGCTGTGTTGCGAGACCCGCATGTGACTTAATCAAAACCCCTGTGGGTTC 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GAAGAGTTTCAGCTGTGTTGCGAGACCAGCATGTGACTTAATCAAAACCCCTGTGGGTTC 479
Query 481 TACAAGGTATCTTTTGGGATCGGACCCGGATTCTA-TTACGGGTTCT-GTGGATCAGGAT 538
||||||||||||||||| ||| ||||||||||||| || |||| ||| || || ||||
Sbjct 480 TACAAGGTATCTTTTGGAATCCGACCCGGATTCTATTTCCGGG-TCTACAGG-TCGGGAT 537
Query 539 CCGGCTAAGACGGTAGAAGCTGAAGCTCCTGCTGGTGAAGACAAAACGTTGACAGAGAAG 598
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 538 CCGGCTAAGACGGTAGAAACTGAAGCTCCTGCTGGTGAAGACATAACGTTGACGGAGAAG 597
Query 599 AAGACAACTTGTGGTGATACAGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 658
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGACAACTTGTGGTGGTTCGGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGC 657
Query 659 AGAGGCTGTGAAGGCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAGGCTGTGAAGCCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTC 717
Query 719 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATA 778
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 AACATAGATTTTGCTGCAAAGAAAGTGACTGTGACCGGAGATATCACTCCCTTGGAAATA 777
Query 779 TTGGATAGCATTTCAAAGGTTAAAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAG 838
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 TTGGATAGCATCTCAAAGGTTAAAAATGCCCAATTTTGGACAACTCCAACAATCCCAAAG 837
Query 839 CCGAACGTGGAAACACAAAATCCCTAAT 866
|||||||| ||||| |||||||||||||
Sbjct 838 CCGAACGTAGAAACCCAAAATCCCTAAT 865
> Ahg901607 jgi|Araly1|901607|Al_scaffold_0004_2257
Length=780
Score = 1127 bits (610), Expect = 0.0
Identities = 727/783 (93%), Gaps = 10/783 (1%)
Strand=Plus/Plus
Query 86 ATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCGACAGCCATATGTTCAAGCATGGAC 145
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAAGGGACGTATGTTTTGCGCTTCGCAAGCATCAACAGCCATATGTTCAAGCATGGAC 60
Query 146 CACGTTCACAAATCAACCACCACCGACGAAGATGAACGAAACAGCGGCCGAGCTATAGAC 205
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 61 CACGTTCACAAATCAACCACCACCGAAGAAGATGAACGAAGTAGCGGCCGAGCTATAGAC 120
Query 206 CGCCACAACCCGATCATTAAAGATGGCCGAAGATCATTCGCTGACGACTTCATTAAACTA 265
|||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 121 CGCCACAATCCGATCATTAAAGATGGCCGAAGATCATTCGCCGAGGACTTCATCAAACTA 180
Query 266 CCAACTTCCGCAGAAGACGGAGAGATGAGTAACAAAAAGCTAGAGATCTATAAAGGCAGG 325
||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CCAGCTTCCGCCGAAGACGGAGAGATGAGTAACAAAAAACTAGAGATCTATAAAGGCAGG 240
Query 326 AGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGGCGGTGGAGGCGGAGCAGCGGCGTTG 385
|||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 241 AGAAGCATTACTGGCCGGAGAAGCACGGGTGGTGGCGGGGGAGGCGGAGCAGCGGCGTTG 300
Query 386 TTGAAGCTGATCACTAATGACATTGGCTTAGCAAGGAAGAGTTTCAGCTGTGTTGCGAGA 445
|||||||| || || |||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 301 TTGAAGCTTATTACCAATGACATTGGCCTAGCGAGGAAGAGTTTCAGCTGTGTTGCTAGA 360
Query 446 CCCGCATGTGACTTAATCAAAACCCCTGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 505
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 CCCGCTTGTGACTTAATCAAAACCCATGTGGGTTCTACAAGGTATCTTTTGGGATCGGAC 420
Query 506 CCGGATTCTATTAC-GGGTTCTGTGGATCAGGATCCGGCTAAGACGGTAGAAGCTGAAGC 564
|||||||||||| | ||| ||| || ||||| |||||||| ||||||||||||||||||
Sbjct 421 CCGGATTCTATTTCTGGG-TCTCCGGGTCAGGTTCCGGCTATGACGGTAGAAGCTGAAGC 479
Query 565 TCCTGCTGGTGAAGACAAAACGTTGACAGAGAAGAAGACA-ACTTGTGGT-G-A-TACAG 620
|||||||||||||| || ||||||||| | | |||||| | ||||||| | | | | | |
Sbjct 480 TCCTGCTGGTGAAGGCATAACGTTGAC-G-G-AGAAGA-ATACTTGTGTTGGTAGTTCGG 535
Query 621 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTA 595
Query 681 GGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTCAACATAGATTTTGCTGCAAAGA 740
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 596 GGAAACACTTGGCCAGAATGCAAGGTGTGACATCCTTCAACATAGATTTTGCTGCAAAGA 655
Query 741 AAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGATAGCATTTCAAAGGTTA 800
| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 656 AGGTAACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGAAAGTATCTCAAAGGTTA 715
Query 801 AAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAGCCGAACGTGGAAACACAAAATC 860
||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||
Sbjct 716 AAAATGCCCAATTTTGGACAACTCCAACATTCCCAAAGCCAAACGTGGAAACCCAAAATC 775
Query 861 CCT 863
|||
Sbjct 776 CCT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5