BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37400.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg482732 jgi|Araly1|482732|fgenesh2_kg.4__1792__AT2G37400.1 1716 0.0 Ahg938259 jgi|Araly1|938259|scaffold_502450.1 556 1e-157 > Ahg482732 jgi|Araly1|482732|fgenesh2_kg.4__1792__AT2G37400.1 Length=1206 Score = 1716 bits (929), Expect = 0.0 Identities = 1139/1234 (92%), Gaps = 40/1234 (3%) Strand=Plus/Plus Query 1 GTAGGGTTTTTAGGGG-TTT-TCTCTCTCT-T-TGCAATCATGGAGTCTCTAGGGAAGCT 56 |||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||| Sbjct 1 GTAGGGTTTTTAGGGGTTTTCTCTCTCTCTCTCTGCAATCATGGAGTCTCTAGGGAAGCT 60 Query 57 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCATTTCTCTTCATCTTTCCCCAA 116 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 61 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCACTTCTCTTCATCTTTCCCTAA 120 Query 117 AA-AGCCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTCAAATGCA 175 || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 AACA-CCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTGAAATGCG 179 Query 176 TTTCAATCAAAGCTTCCTCATCCAAGTCTCAAGACTCGAAGCTCTCAATCCTCAAATCCA 235 |||||||||||||||| |||||||| || |||||||||| ||||||| |||||||||||| Sbjct 180 TTTCAATCAAAGCTTCATCATCCAAATCCCAAGACTCGAGGCTCTCATTCCTCAAATCCA 239 Query 236 CATGCGTCAGCTTCACTGCGGCAGCAGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 295 | ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 240 CCTGCGTCACCTTCACTGCAGCAGCGGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 299 Query 296 CACCGGCGATTGCGGCTCCTGTGGCGGCGACGCCGTTAATGGAATCTCTCAAACAAAGT- 354 | ||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||| Sbjct 300 CTCCGGCGATTGCGGCTCCTGTGGCGGCGACACCGTCGGTGGAATCTCTTAAACAGAGTA 359 Query 355 --AACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGT-ATCTTGCTTCT 411 |||||| | || ||||| ||||||||||||||||| |||||||| | ||||||||||| Sbjct 360 ACAACGGAGATGTGTCATTGGAAGAAGAAGAGAGATCGCTCGAAGA-TCATCTTGCTTCT 418 Query 412 CACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGAAAG 471 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 419 CACCCTGAAGATGTGGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTAGAAAG 478 Query 472 CTTCTAGAAGCTATAGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 531 ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CTTATAGAAGCGATTGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 538 Query 532 TGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 591 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TGGCCAATTTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 598 Query 592 GGTTTTGAAGAGATTCTAGTCAAAGATCCGCTTCGTGTCGAGGCTTATCACGGTTTAGTT 651 |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 599 GGTTTTGAAGAGATTCTAGTTAAGGATCCGCTTCGTGTCGAGGCTTATCACGGCTTAGTT 658 Query 652 ATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAGAGAATTGAGGAGGCA 711 ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| Sbjct 659 ATGGCTTATTCTGATTCCGGTGCTGATTTGAATGCGGTGGAGAAGAGAATTGAGGAGGCA 718 Query 712 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAAGCTACTAGTG 771 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 719 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGATTTGAGGGATTTTAAGCTACTAGTG 778 Query 772 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 838 Query 832 GTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 891 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GTGAAGGAAGAACCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 898 Query 892 TTGAAGAAGGA-GAATGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 950 ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TTGAAGAAGCAAGA-TGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 957 Query 951 GAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGAAGCTCTTTGCCGA 1010 |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| || Sbjct 958 GAATCATCCTTACAGAGAGTATTTTATGGATAATATGGTTGCTACGAAGATCTTTGCGGA 1017 Query 1011 GAAGGTACAGCGAGAGATGGCTGAATGATTGTCTTACGAAATGCT-AGTCGTGCTTGAAT 1069 ||| | ||||||||||||||||| ||||||| ||| ||| || | | | | ||| | Sbjct 1018 GAAAGCACAGCGAGAGATGGCTGGATGATTG-CTT--GAA-TG-TGA-T--T--TTG--T 1065 Query 1070 GTGGttttttttGTCTCTTTTCTGTTGCTAATGGTTTTAGATGGTTGTAGTATGTAGGTT 1129 |||| || ||| |||||||||||| ||||||||||||||||| |||| || Sbjct 1066 -TGGT---------CT-TTT-CTGTTGCTAATGATTTTAGATGGTTGTAGTCGGTAGTTT 1113 Query 1130 GAGCTTGAATTTATGTCGTGATCGTGTGTTGTAGTA-CGGATCGAATACTCAATATGGGA 1188 |||| ||||||||| ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1114 GAGCATGAATTTATATCGTGATCGTGTGTTGTAGTATCG-ATCGAATACTCAATATGGGA 1172 Query 1189 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1222 |||||||||||||||||||||||||||||||||| Sbjct 1173 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1206 > Ahg938259 jgi|Araly1|938259|scaffold_502450.1 Length=1063 Score = 556 bits (301), Expect = 1e-157 Identities = 569/697 (82%), Gaps = 24/697 (3%) Strand=Plus/Plus Query 350 AAAGTAACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGTATCTTGCT- 408 |||| || | ||||||| | || ||||||||||||||| | || || ||| || ||| | Sbjct 334 AAAGCAAAGAAAACGTTACCTTGGAAGAAGAAGAGAGAGCGCTTGATGAGCAT-TTGATA 392 Query 409 TCTCACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGA 468 |||||||| |||||| || ||||| || || || |||||||||| ||||| ||||||| Sbjct 393 ACTCACCCTTCTGATGTCGACGCTCTTCGTTCCTTGATGGAGGTAAAGATCAGATCTCGA 452 Query 469 AAGCTT-CTAGAAGCTATAGAATTGATTGATAGGT-TGATTGAATTGGAACCAGAGGAGA 526 |||||| | |||||| ||||| |||| ||| || | || |||||||||| || || | Sbjct 453 AAGCTTAC-AGAAGCCGTAGAAGTGATCGAT-CGTCTTATAAAATTGGAACCTGAAGAAA 510 Query 527 AGGAATGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCT-GCT 585 | ||||||||| | |||||||| || ||||| | ||||||||||||||||| | | ||| Sbjct 511 AAGAATGGCCAGTTTTGAAAGCAAACATCTTCACCTACAGTGGAGATTTAGA-TTTAGCT 569 Query 586 AAAACTGGTTTTGAAGAGATTCTAGTC-AAAGATCCGCTTCGTGTCGAGGCTTATCACGG 644 |||||||| |||||||||||||| | | ||||||||||||||||| || ||||||||||| Sbjct 570 AAAACTGGATTTGAAGAGATTCT-GGCTAAAGATCCGCTTCGTGTTGAAGCTTATCACGG 628 Query 645 TTTAG-TTATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAG-AGAATT 702 || | ||||||||||||| ||| | ||| ||||||||| | |||||| || |||||| Sbjct 629 CTT-GCTTATGGCTTATTCCGATGCAGGTCTTGATTTGAAAGAGGTGGAG-AGTAGAATT 686 Query 703 GAGGAGGCAATGGTT-AGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAA 761 ||||| ||||| ||| | |||||| || ||||| |||| ||| || || | |||||||| Sbjct 687 GAGGAAGCAAT-GTTGAAGTGCAAAAAAGAGAATAATCATAACGATTTTCGGGATTTTAA 745 Query 762 GCTACTAGTGGCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAG-TTGT 820 |||||| ||||| || |||||||| |||||||| ||||||| ||||||||||||| || | Sbjct 746 GCTACTCGTGGCACAGATTCGGGTCATTGAAGGAAAGCATAGTGAAGCATTGAAGCTT-T 804 Query 821 ATGAGGAGCTTGTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGG-ATT 879 || | ||||||||||| || || || |||||||||||||||||||| |||| |||| || Sbjct 805 ATCAAGAGCTTGTGAAAGAGGAACCAAGAGATTTCAGGCCGTATCTTTGTC-AGGGAATA 863 Query 880 ATATACACAGTGTTGAAGAAGGAGA-ATGAGGC-GGAGAAACAGTTTGAGAAGTTTAGGA 937 ||||||||| || ||||||| || | | |||| | || |||||||||| || ||| ||| Sbjct 864 ATATACACATTGCTGAAGAA-GAAAGACAAGGCAGAAG-AACAGTTTGATAACTTTCGGA 921 Query 938 GACTTGTCCCGAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGA 997 |||||| || ||||||||||||||||||||||||||||||||||||||| | || | | Sbjct 922 AACTTGTTCCAAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGATAGCAACAA 981 Query 998 AGCTCTTTGCCGAGAAGGTACAGCGAGAGATGGCTGA 1034 |||| ||| | ||||||| ||||| ||||||||||| Sbjct 982 AGCTTTTTTCGGAGAAGGCGCAGCGTGAGATGGCTGA 1018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5