BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37400.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482732 jgi|Araly1|482732|fgenesh2_kg.4__1792__AT2G37400.1 1716 0.0
Ahg938259 jgi|Araly1|938259|scaffold_502450.1 556 1e-157
> Ahg482732 jgi|Araly1|482732|fgenesh2_kg.4__1792__AT2G37400.1
Length=1206
Score = 1716 bits (929), Expect = 0.0
Identities = 1139/1234 (92%), Gaps = 40/1234 (3%)
Strand=Plus/Plus
Query 1 GTAGGGTTTTTAGGGG-TTT-TCTCTCTCT-T-TGCAATCATGGAGTCTCTAGGGAAGCT 56
|||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1 GTAGGGTTTTTAGGGGTTTTCTCTCTCTCTCTCTGCAATCATGGAGTCTCTAGGGAAGCT 60
Query 57 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCATTTCTCTTCATCTTTCCCCAA 116
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 61 ACAGCTTCATCAGCAACCAAATCACCTCTCTTTCACTCACTTCTCTTCATCTTTCCCTAA 120
Query 117 AA-AGCCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTCAAATGCA 175
|| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AACA-CCTTCGTCTTTCTCTCTCAGATCCTTACCCAGATCAACATCATCCTTGAAATGCG 179
Query 176 TTTCAATCAAAGCTTCCTCATCCAAGTCTCAAGACTCGAAGCTCTCAATCCTCAAATCCA 235
|||||||||||||||| |||||||| || |||||||||| ||||||| ||||||||||||
Sbjct 180 TTTCAATCAAAGCTTCATCATCCAAATCCCAAGACTCGAGGCTCTCATTCCTCAAATCCA 239
Query 236 CATGCGTCAGCTTCACTGCGGCAGCAGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 295
| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CCTGCGTCACCTTCACTGCAGCAGCGGCACTGTTCCTTGTGAATCTCCAGCTCAAACCTT 299
Query 296 CACCGGCGATTGCGGCTCCTGTGGCGGCGACGCCGTTAATGGAATCTCTCAAACAAAGT- 354
| ||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||
Sbjct 300 CTCCGGCGATTGCGGCTCCTGTGGCGGCGACACCGTCGGTGGAATCTCTTAAACAGAGTA 359
Query 355 --AACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGT-ATCTTGCTTCT 411
|||||| | || ||||| ||||||||||||||||| |||||||| | |||||||||||
Sbjct 360 ACAACGGAGATGTGTCATTGGAAGAAGAAGAGAGATCGCTCGAAGA-TCATCTTGCTTCT 418
Query 412 CACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGAAAG 471
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 CACCCTGAAGATGTGGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTAGAAAG 478
Query 472 CTTCTAGAAGCTATAGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 531
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTATAGAAGCGATTGAATTGATTGATAGGTTGATTGAATTGGAACCAGAGGAGAAGGAA 538
Query 532 TGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 591
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGCCAATTTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCTGCTAAAACT 598
Query 592 GGTTTTGAAGAGATTCTAGTCAAAGATCCGCTTCGTGTCGAGGCTTATCACGGTTTAGTT 651
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 599 GGTTTTGAAGAGATTCTAGTTAAGGATCCGCTTCGTGTCGAGGCTTATCACGGCTTAGTT 658
Query 652 ATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAGAGAATTGAGGAGGCA 711
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 659 ATGGCTTATTCTGATTCCGGTGCTGATTTGAATGCGGTGGAGAAGAGAATTGAGGAGGCA 718
Query 712 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAAGCTACTAGTG 771
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 719 ATGGTTAGGTGCAAGAAGGAGAAGAATCGTAAGGATTTGAGGGATTTTAAGCTACTAGTG 778
Query 772 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAGTTGTATGAGGAGCTT 838
Query 832 GTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 891
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTGAAGGAAGAACCGAGAGATTTCAGGCCGTATCTATGTCAAGGGATTATATACACAGTG 898
Query 892 TTGAAGAAGGA-GAATGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 950
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGAAGAAGCAAGA-TGAGGCGGAGAAACAGTTTGAGAAGTTTAGGAGACTTGTCCCGAA 957
Query 951 GAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGAAGCTCTTTGCCGA 1010
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 958 GAATCATCCTTACAGAGAGTATTTTATGGATAATATGGTTGCTACGAAGATCTTTGCGGA 1017
Query 1011 GAAGGTACAGCGAGAGATGGCTGAATGATTGTCTTACGAAATGCT-AGTCGTGCTTGAAT 1069
||| | ||||||||||||||||| ||||||| ||| ||| || | | | | ||| |
Sbjct 1018 GAAAGCACAGCGAGAGATGGCTGGATGATTG-CTT--GAA-TG-TGA-T--T--TTG--T 1065
Query 1070 GTGGttttttttGTCTCTTTTCTGTTGCTAATGGTTTTAGATGGTTGTAGTATGTAGGTT 1129
|||| || ||| |||||||||||| ||||||||||||||||| |||| ||
Sbjct 1066 -TGGT---------CT-TTT-CTGTTGCTAATGATTTTAGATGGTTGTAGTCGGTAGTTT 1113
Query 1130 GAGCTTGAATTTATGTCGTGATCGTGTGTTGTAGTA-CGGATCGAATACTCAATATGGGA 1188
|||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1114 GAGCATGAATTTATATCGTGATCGTGTGTTGTAGTATCG-ATCGAATACTCAATATGGGA 1172
Query 1189 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1222
||||||||||||||||||||||||||||||||||
Sbjct 1173 ATCTTGAATTGCTTGCACTGTTTTTTGAGATGTG 1206
> Ahg938259 jgi|Araly1|938259|scaffold_502450.1
Length=1063
Score = 556 bits (301), Expect = 1e-157
Identities = 569/697 (82%), Gaps = 24/697 (3%)
Strand=Plus/Plus
Query 350 AAAGTAACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGTATCTTGCT- 408
|||| || | ||||||| | || ||||||||||||||| | || || ||| || ||| |
Sbjct 334 AAAGCAAAGAAAACGTTACCTTGGAAGAAGAAGAGAGAGCGCTTGATGAGCAT-TTGATA 392
Query 409 TCTCACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGA 468
|||||||| |||||| || ||||| || || || |||||||||| ||||| |||||||
Sbjct 393 ACTCACCCTTCTGATGTCGACGCTCTTCGTTCCTTGATGGAGGTAAAGATCAGATCTCGA 452
Query 469 AAGCTT-CTAGAAGCTATAGAATTGATTGATAGGT-TGATTGAATTGGAACCAGAGGAGA 526
|||||| | |||||| ||||| |||| ||| || | || |||||||||| || || |
Sbjct 453 AAGCTTAC-AGAAGCCGTAGAAGTGATCGAT-CGTCTTATAAAATTGGAACCTGAAGAAA 510
Query 527 AGGAATGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCT-GCT 585
| ||||||||| | |||||||| || ||||| | ||||||||||||||||| | | |||
Sbjct 511 AAGAATGGCCAGTTTTGAAAGCAAACATCTTCACCTACAGTGGAGATTTAGA-TTTAGCT 569
Query 586 AAAACTGGTTTTGAAGAGATTCTAGTC-AAAGATCCGCTTCGTGTCGAGGCTTATCACGG 644
|||||||| |||||||||||||| | | ||||||||||||||||| || |||||||||||
Sbjct 570 AAAACTGGATTTGAAGAGATTCT-GGCTAAAGATCCGCTTCGTGTTGAAGCTTATCACGG 628
Query 645 TTTAG-TTATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAG-AGAATT 702
|| | ||||||||||||| ||| | ||| ||||||||| | |||||| || ||||||
Sbjct 629 CTT-GCTTATGGCTTATTCCGATGCAGGTCTTGATTTGAAAGAGGTGGAG-AGTAGAATT 686
Query 703 GAGGAGGCAATGGTT-AGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAA 761
||||| ||||| ||| | |||||| || ||||| |||| ||| || || | ||||||||
Sbjct 687 GAGGAAGCAAT-GTTGAAGTGCAAAAAAGAGAATAATCATAACGATTTTCGGGATTTTAA 745
Query 762 GCTACTAGTGGCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAG-TTGT 820
|||||| ||||| || |||||||| |||||||| ||||||| ||||||||||||| || |
Sbjct 746 GCTACTCGTGGCACAGATTCGGGTCATTGAAGGAAAGCATAGTGAAGCATTGAAGCTT-T 804
Query 821 ATGAGGAGCTTGTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGG-ATT 879
|| | ||||||||||| || || || |||||||||||||||||||| |||| |||| ||
Sbjct 805 ATCAAGAGCTTGTGAAAGAGGAACCAAGAGATTTCAGGCCGTATCTTTGTC-AGGGAATA 863
Query 880 ATATACACAGTGTTGAAGAAGGAGA-ATGAGGC-GGAGAAACAGTTTGAGAAGTTTAGGA 937
||||||||| || ||||||| || | | |||| | || |||||||||| || ||| |||
Sbjct 864 ATATACACATTGCTGAAGAA-GAAAGACAAGGCAGAAG-AACAGTTTGATAACTTTCGGA 921
Query 938 GACTTGTCCCGAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGA 997
|||||| || ||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 922 AACTTGTTCCAAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGATAGCAACAA 981
Query 998 AGCTCTTTGCCGAGAAGGTACAGCGAGAGATGGCTGA 1034
|||| ||| | ||||||| ||||| |||||||||||
Sbjct 982 AGCTTTTTTCGGAGAAGGCGCAGCGTGAGATGGCTGA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5