BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37410.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482733 jgi|Araly1|482733|fgenesh2_kg.4__1793__AT2G37410.1 833 0.0
> Ahg482733 jgi|Araly1|482733|fgenesh2_kg.4__1793__AT2G37410.1
Length=1083
Score = 833 bits (451), Expect = 0.0
Identities = 606/676 (90%), Gaps = 30/676 (4%)
Strand=Plus/Plus
Query 475 GGGGCTGGTGCTGCTTCGAGATCAGCTATTTTTGGAGGGGTTTTGCTTGCTTTGATTGAA 534
|||| ||| || ||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 432 GGGGTTGGCGCGGCTTCAAGATCAGCGGCTTTTGGAGGGGTTTTACTTGCTTTGATTGAA 491
Query 535 GGAGCTGGGATCATGTTGAACAAGGTACTGGCTCAGCCTCAGAATATGATGATGGAGGA- 593
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 492 GGAGCTGGGATAATGTTGAACAAGCTACTGGCTCAGCCTCAGAATATGATGATGGAGGAT 551
Query 594 CCCTGGAATGCAAGGAATGCCTGGGATGCAGGGAATGCAGGGAATGCCTGGGATGCCCGG 653
||| ||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 552 CCC-GGAATGCAAGGAATGCCTGGGATGC--------C-CGGAATGCCTGGGATGCAAGG 601
Query 654 AATGCAAGGAATGCCTGGGATGCAAGGAATGCAGATGGGGCAGATGCAGAGTCAAGCACA 713
|||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 602 AATGCAAGGAATACAAGGAATGCAAGGAATGCAGATGGGGCAGATGCAGAATCAAGCACA 661
Query 714 GATAAGGTCAGAGAGTCAAAACCAGAATACAGCTtcatcatcatcatcatcatcatGGTT 773
||| | |||||||||||||||||||| ||||| | | |||||||||||||||||
Sbjct 662 GATGATGTCAGAGAGTCAAAACCAGAGTACAG------C-T--TCATCATCATCATGGTT 712
Query 774 TGGAGGGCTTTTTGATAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGAAAGTAAAACAGA 833
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 713 TGGAGGGCTTTTTGGTAAGAAAAAGGAGGAGGTGCAACCAGGCAGTGGAAGTAAAACAGA 772
Query 834 GGTGTTGGAGAGTTTTGATGCTCCTCCGGTGCCATCATTTGAGTTCAAGTAAGCTT-TGT 892
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 773 GGTGTTGGAGAGTTTTGATGCACCTCCGGTGCCATCATTTGAGTACAAGTAAGCTTATGT 832
Query 893 GGACATCTATTTCTCTGTCATCCAA----TGGTTTACCTACTGCCTCAACTATCAATTCC 948
||||||| |||||||||| ||| |||||| |||||||||||||| |||||||||
Sbjct 833 GGACATC----TCTCTGTCATTCAATGGTTGGTTTGCCTACTGCCTCAACAATCAATTCC 888
Query 949 ATTTCGTCGTCTTTTTGTCTATCCTAAGTTCTCAGCTGAATTCTTCTTGTTCATGGAAGA 1008
|||||||||| |||| || |||||| |||||| ||||||||||||||||||||||||||
Sbjct 889 ATTTCGTCGT-TTTTGGTGTATCCTCTGTTCTCTGCTGAATTCTTCTTGTTCATGGAAGA 947
Query 1009 ATCAGCATGCTATGTTCTCTCTCTTTTCACTTATGGTTATGTTTCAATGAGCTTATGCAC 1068
||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||| ||
Sbjct 948 ATCAGCATGCTATGTCCTCTCTCCTTTCGCCTATGGTTATGTTTCAATGAGCTTATGTAC 1007
Query 1069 TCAATCTAGGAATATTCTCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1128
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TCAATCTAGGAATCTTATCTTTGTGAAACCATTCCACAGATATTGTTGGTTCTTAAATAA 1067
Query 1129 TGTAGTTATAGATTTT 1144
||||||||||||||||
Sbjct 1068 TGTAGTTATAGATTTT 1083
Score = 623 bits (337), Expect = 9e-178
Identities = 409/442 (93%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 1 GACGCCGtttcttc-ttttaccttccttctctcgctcaccgtcgcacctccttcattttt 59
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACGCCGTTTCTTCATTTT--CTTCCTTCTCTCGCTCACCGTCGCACCTCCTTCATTTTC 58
Query 60 tctctctctctcAAACTCGTCTCTAAAACTCGTCCGTCGATTAATTCCTCGTTAGTCTCA 119
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 59 TCTCTCTCTCTCAAACTCG--TCT----CTCGTCCGCCGATTAATTCCTCGTTAGTCTCA 112
Query 120 GGTTTGATAGAATCATTGCCTGAGGCATCTAATAATGGGAACACCAGAGACATCTCGGGA 179
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 113 GGTTTGATAGAATCATTGCCTGAGGTATCTATTAATGGGAACACCAGAGACATCTCGAGA 172
Query 180 GCCTTGCCCTGATCGTATACTCGATGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 239
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 GCCTTGCCCTGACCGTATCCTCGACGATATCGGTGGTGCTTTTGGTATGGGAGCTGTTGG 232
Query 240 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCTCCTAAAGGTAGTCGCTTTGT 299
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 233 AGGATCTGCCTTTCATTTCATTAAAGGGACTTACAATTCCCCCAAAGGTAGTCGCTTTGT 292
Query 300 TGGAGGAACACAATCGGTGAGCATGAACGCACCTCGTACT-GGAGGCAGTTTTGCTGTTT 358
||||||||||||| | ||||||||||| || |||||| || ||||||||||||||||| |
Sbjct 293 TGGAGGAACACAAGCTGTGAGCATGAATGCTCCTCGT-CTTGGAGGCAGTTTTGCTGTAT 351
Query 359 GGGGAGGTTTATTCTCGACATTTGACTGTACCATGGTGTACCTAAGGCAAAAGGAGGATC 418
||||||||||||||||||| ||||||||| ||||||||||| || |||| ||||||||||
Sbjct 352 GGGGAGGTTTATTCTCGACCTTTGACTGTTCCATGGTGTACTTA-GGCAGAAGGAGGATC 410
Query 419 CTTGGAACTCTATCATTGCTGG 440
| |||||||||||||| |||||
Sbjct 411 CGTGGAACTCTATCATCGCTGG 432
Score = 60.2 bits (32), Expect = 3e-08
Identities = 39/42 (93%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 644 GGATGCCCGGAATGCAAGGAATGCCTGGGATGCAAGGAATGC 685
|||| |||||||||||||||||||||||||||| |||||||
Sbjct 548 GGAT-CCCGGAATGCAAGGAATGCCTGGGATGCCCGGAATGC 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5