BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37430.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482736 jgi|Araly1|482736|fgenesh2_kg.4__1796__AT2G37430.1 880 0.0
> Ahg482736 jgi|Araly1|482736|fgenesh2_kg.4__1796__AT2G37430.1
Length=784
Score = 880 bits (476), Expect = 0.0
Identities = 593/647 (92%), Gaps = 17/647 (3%)
Strand=Plus/Plus
Query 1 TCAATTCAGGTTTCTTTTCTAACAAGCAAAAACTCCAACCTTTACTTTATTTTTGTTTTG 60
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCAATTCAGGTTTCTTTTCTAACAAGCAAAAACTCCAACCTTTAC------------TT- 47
Query 61 TTTTGTAACCCTCTCAGATCTTAA-TT-CTCAAAGAAGTATGAAGAGAGAAAGATCTGAT 118
|||| ||||||||||| ||||||| || || ||| |||||||||||||||||||||||||
Sbjct 48 TTTTATAACCCTCTCAAATCTTAATTTACTAAAAAAAGTATGAAGAGAGAAAGATCTGAT 107
Query 119 TTCGAAGAATCCCTCAAGAATATTGACATTGCTAAATGTCTGATGATACTAGCACAAACC 178
|||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 108 TTCGAAGAATCCATCAAGAATCTAGACATTGCCAAATGTCTGATGATTCTAGCACAAACC 167
Query 179 TCCATGGTCAAACAGATCGGTTTGAACCAACATACCGAGAGCCATACAAGCAACCAATTC 238
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 168 TCCATGGTTAAACAGATCGGTTTGAGCCAACATACCGAGAGCCATACAAGCAACCGATTC 227
Query 239 GAATGCAAAACATGTAACAAGAGATTTTCTTCGTTTCAAGCCCTTGGTGGCCACCGGGCA 298
|||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 228 GAATGCAAGACGTGTAACCGGAGATTTTCTTCGTTTCAAGCCCTTGGTGGTCACCGGGCA 287
Query 299 AGCCATAAGAAGCCAAAGCTCACCGTTGAGCAGAAAGATGTGAAACATCTTAGCAACGAT 358
|||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| ||
Sbjct 288 AGCCATAAGAAGCCAAAGCTCACCCTTGAGCAGAAAGATGTCAAACCTCTTAGCAACAAT 347
Query 359 TATAAAGGAAATCATTTTCACAAGTGTTCCATATGCAGTCAGAGTTTTGGGACCGGACAG 418
|| |||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||
Sbjct 348 TACAAAGGAAATCATACGCACGAGTGTTCCATATGCGGTCAAAGTTTTGGGACCGGACAG 407
Query 419 GCTTTAGGTGGTCACATGAGACGGCATAGGTCAAGCATGACGGTCGAGCCATCGTTCATC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GCTTTAGGTGGTCACATGAGACGGCATAGGTCAAGCATGACGGTCGAGCCATCGTTCATC 467
Query 479 TCTCCGATGATTCC-ATCCATGCCGGTTTTGAAACGATGCGGTAGTAGTAAGAGGATTTT 537
|||||| ||||||| | ||||||| ||||||||||||||| ||||||| |||||| ||||
Sbjct 468 TCTCCGGTGATTCCTA-CCATGCCAGTTTTGAAACGATGCAGTAGTAGCAAGAGGGTTTT 526
Query 538 GAGTTTGGATTTGAATCTGACTCCGTTAGAGAATGATCTTGAATATATCTTTGGGAAGAC 597
| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 527 GTGTTTGGATTTGAATCTAACTCCGTTAGAGAATGATCTTGAATATATTTTTGGGAAGAC 586
Query 598 ATTTGTCCCAAAAATAGATATGAAGTTCGTTCTTTAGtttttttttt 644
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 587 ATTTGTCCCAAAAATAGATATGAAGTTCGCTCTTTAGTTTTTTTTTT 633
Score = 148 bits (80), Expect = 5e-35
Identities = 83/84 (99%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 680 TTCATTTGTATTGTAATTCCTATTCTTTTAATTCTTCAAACGTT-AATGTCAACAAACTT 738
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 633 TTCATTTGTATTGTAATTCCTATTCTTTTAATTCTTCAAACGTTAAATGTCAACAAACTT 692
Query 739 CATGGTATATGTGTGGGGTCCCTA 762
||||||||||||||||||||||||
Sbjct 693 CATGGTATATGTGTGGGGTCCCTA 716
Score = 115 bits (62), Expect = 5e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 799 TATCATGTACGCTAGAAAAAGATTTTAAACTAAATTATTTAGTTTCCATTCCTGGAACAA 858
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAT-ATGTACTCTAGAAAAAGATTTTAAACTAAATTATTTAGTTTCCATTCCTGGAACAA 775
Query 859 GTACAACAT 867
|||||||||
Sbjct 776 GTACAACAT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5