BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37435.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345475 jgi|Araly1|345475|fgenesh1_pg.C_scaffold_4001817 486 7e-137
> Ahg345475 jgi|Araly1|345475|fgenesh1_pg.C_scaffold_4001817
Length=699
Score = 486 bits (263), Expect = 7e-137
Identities = 501/609 (82%), Gaps = 44/609 (7%)
Strand=Plus/Plus
Query 23 ATGATTTACCAGATTGGAGAAATAAGCTGGAACCTGTGTTTTTGGAAT---TTGAGGATG 79
|||||| | ||||||||||| || ||| ||||||||| | |||||| ||||| |
Sbjct 110 ATGATTCAGAAGATTGGAGAACTACGCTAGAACCTGTGGATCTGGAATACACGGAGGA-G 168
Query 80 GTTG-TGTTCCTGAGGAAC-A-TTATTATCCGT-GTATAAGACGCCGTGAGGATGAAGAG 135
| || |||| || || || | |||||||| | |||||||||||||||| |||||||||
Sbjct 169 GATGATGTTGATG-GG-ACAAGGTATTATCC-TAGTATAAGACGCCGTGAAGATGAAGAG 225
Query 136 CCCAAGATCTCGGCGGAAGAAGAGTAT-TACCTCATGGTGAAAG-AAGTCGAGGATTCCA 193
||||||||| |||| || |||||| | |||||||| | ||| ||||||| || ||||
Sbjct 226 ---AAGATCTCGCCGGAGGATGAGTATCT-CCTCATGGAG-AAGCAAGTCGAAGAGTCCA 280
Query 194 AGGGTTTTGACATCGATTTCGCCAAGTTCCGCTGCGTTTTCAATTAC-CGACCAGTTGAT 252
||||||||||||| |||||| |||||||||||||| ||||||||||| | ||||| ||||
Sbjct 281 AGGGTTTTGACATTGATTTCACCAAGTTCCGCTGCCTTTTCAATTACAC-ACCAGCTGAT 339
Query 253 CTCGA---TGACAACGAGTTGGCTTT-GGAACCAGAAACTACCAGAGAGTTTA-TGGAC- 306
||||| ||| ||| |||| | ||| ||||||||||| ||||||| | ||| | |||
Sbjct 340 CTCGATCTTGAAAACCAGTTCG-TTTATGAACCAGAAACCACCAGAG-GGTTATTAGACA 397
Query 307 AGACTGTGTCGGAAATCCCTT--GAGCATTTCAATG-AAATTCATAGTACAAAATATGAA 363
|| || | | ||||||||||| ||| | ||||||| || | |||| | |||||||||
Sbjct 398 AG-CTTTCTAGGAAATCCCTTAAGAG-A-TTCAATGCTAAGT-ATAGCAGAAAATATGAG 453
Query 364 TTTGTC-AGGTTTATCAAAGCCAATCATCACGTCTCTGCTGGCATGATGTATTTCATTAC 422
|||||| ||| |||||||||||||| ||||| || |||||||||| |||| |||||||||
Sbjct 454 TTTGTCAAGG-TTATCAAAGCCAATTATCACATCACTGCTGGCATCATGTTTTTCATTAC 512
Query 423 CTTTGAAGGTAAGCTACTTTCCAATGATGATGACTCAAAACAGTTCCAAGCTAAGCTCTG 482
||||||||||||||||| || || ||||||||||| |||| ||||||| ||||| || |
Sbjct 513 CTTTGAAGGTAAGCTAC-TT--AACGATGATGACTCTAAACTGTTCCAAACTAAGATCCG 569
Query 483 CTATTGCGGTGGTACCCCCGAAATCATCTCATGCGAACTCAAACCCTAGAG-AAAA-GTT 540
|||||||||| ||||| ||| || ||||||||||||||||| ||| ||| |||| |||
Sbjct 570 CTATTGCGGTCGTACCATCGATATTGTCTCATGCGAACTCAAA-CCT-GAGAAAAATGTT 627
Query 541 CACTCCATCGAAGCACCGGAGAAAGAAGATCCCAAGAAACCAAGATTGACACTTGAGCCA 600
|||||||| ||||| | ||||||||||||||||||||||||||||||||| || | ||||
Sbjct 628 CACTCCATTGAAGCTCTGGAGAAAGAAGATCCCAAGAAACCAAGATTGACCCTGGTGCCA 687
Query 601 TCTAATGTC 609
|||||||||
Sbjct 688 TCTAATGTC 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5