BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37440.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482737 jgi|Araly1|482737|fgenesh2_kg.4__1797__AT2G37440.1 2928 0.0
> Ahg482737 jgi|Araly1|482737|fgenesh2_kg.4__1797__AT2G37440.1
Length=1835
Score = 2928 bits (1585), Expect = 0.0
Identities = 1761/1844 (95%), Gaps = 19/1844 (1%)
Strand=Plus/Plus
Query 1 AACTTTTCTCTCTCTCCCTCACAAGTTTCTTTCTTCTCC-TCAAAAATTTAAACTGGCCC 59
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 AACTTTTCTCTCTCTCCCTCACAAGTTTCTTTCTTCTCCTTC-AAAATTTAAACTGGCCC 59
Query 60 TTCTCCATTTTCGTTCACAAAACCTTGTTTTGTATAACTTATACTCATATCCTCATCCTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTCCATTTTCGTTCACAAAACCTTGTTTTGTATAACTTATACTCATATCCTCATCCTT 119
Query 120 TATAATCCTCTAGATTGTGGTTCTAGACAT-TTTACAAACAACGGTGGCGGAAAAAACGG 178
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 120 TATAATCCTCTAGATTGTGGTTCTAGAC-TCTTTACAAACAACGGTGGCGGAAAAAACGG 178
Query 179 CAGAACGTTCTATTACACAAATATGGGCAAGATCTTGAAATCTAAGTCTTCTTGGCCAAG 238
||| |||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 CAGGACGTTCTA-TCCACAAATATGGGGAAGATCTTGAAATCTAAGTCTTCTTGGCCAAG 237
Query 239 AACCGTCGTGAGGAAATGGTTAAACCTACGTAGCGGCGCTTACGAATTTCACTCTGATTA 298
||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 238 AACCGTCGTGAGGAAGTGGCTAAACCTTCGTAGCGGCTCTTACGAATTTCACTCTGATTA 297
Query 299 CCCAGTCAAAGGGATGGAGCCAAGGCGAAAAAGCTGCTCCGACATGATCGTGCCGGAAAA 358
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 298 TCCAGTCAAAGGGATGGAACCGAGGCGAAAAAGCTGATCCGACATGATCGTGCCGGAAAA 357
Query 359 TTTTCAAGGTTGGTTGGGCCAAGGAAATGGGGATTTAAAACATTCAACCGGTGAACAACA 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTTCCAGGTTGGTTGGGCCAAGGAAATGGGGATTTAAAACATTCAACCGGTGAACAACA 417
Query 419 TGTGACACGCGTTGATGACAAACTTGATCTTAAAATGTTTGTGGGGACATGGAACGTGGG 478
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 418 TGTGACACGCGTTGATGACAAGCTTGATCTTAAAATGTTCGTGGGGACATGGAACGTGGG 477
Query 479 AGGGAAGTCGCCACATGAAGGATTAGACTTAAAAGATTGGCTTAAATCTCCGGCTGATGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 478 AGGGAAGTCGCCACATGAAGGATTAGACTTAAAAGATTGGCTTAAATCTCCCGCCGATGC 537
Query 539 AGACATTTACGTGCTAGGGTTTCAAGAAATCGTGCCGTTAAATGCCGGTAACGTACTTGG 598
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 538 CGACATTTACGTGCTAGGGTTTCAAGAAATCGTGCCGTTAAATGCCGGTAATGTACTTGG 597
Query 599 AGCCGAGGATAATGGCCCTGCGGCTAAGTGGTTGTCTCTTATCCGAGAAGCCTTGAACAA 658
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGCAGAGGATAATGGTCCTGCGGCTAAGTGGTTGTCTCTTATCCGAGAAGCCTTGAACAA 657
Query 659 CACCAACAATTTATCGCCAAATGAGCTCGAGCATACGAAATCATCACAACAGCCCCGTTT 718
|| |||| | ||| | | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 CAACAACGACTTAGCTCAAAATGAGCTCGATCATACGAAATCATCACAACAGCCCCGTTT 717
Query 719 CAGCTTCTCAGGCCTCTCAGATGAT-ACC--CCAATCCCATGCAATTCAACTCCTCCTCG 775
|||||||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||
Sbjct 718 CAGCTTCTCAGGTCTCTCAGATGATAACCGAATAATTCCATGCAATTCGACTCCTCCTCG 777
Query 776 CGGCTATAGCCTTGCGGCGAGTAAACAGATGGTGGGGATATTTTTGTGTGTGTGGGTTAG 835
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGGTATAGCCTTGCGGCGAGTAAACAGATGGTGGGGATATTTTTGTGTGTGTGGGTTAG 837
Query 836 AGATGATCTCCGGAAACGTATAACCAACCTCAAGGTTTCATGTGTTGGCCGTGGTATCAT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGATGATCTCCGGAAACGTATAACCAACCTCAAGGTTTCATGTGTTGGCCGTGGTATCAT 897
Query 896 GGGATATCTTGGAAACAAGGGCTCGGTTTCGATCAGCATGTCGTTGCATGAGACAAGTCT 955
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 898 GGGATATCTTGGAAACAAGGGCTCGGTATCGATCAGCATGTCGTTGCATGAAACAAGTTT 957
Query 956 ATGTTTCGTTTGTACGCATCTTACGTCTGGAGAAAAAGAAGGCGACGAGCTTAGAAGAAA 1015
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 ATGCTTCGTTTGTACCCATCTTACGTCTGGAGAAAAAGAAGGCGACGAGCTCAGAAGAAA 1017
Query 1016 CTTAGATGTGACCGAAATATTTAAGAGGACAAGATTTTCACGTTCTTCTAAAGATTCTCG 1075
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTTAGATGTGTCCGAAATATTTAAGAGGACAAGATTTTCACGTTCTTCTAAAGATTCTCG 1077
Query 1076 ACCGGAGACAATAATGGACCATGATAAAGTAATATGGCTCGGAGATTTGAATTATCGGCT 1135
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACCGGAGACAATTATGGACCATGATAAAGTAATATGGCTCGGAGATTTGAATTATCGGCT 1137
Query 1136 AAGGGCGAGCAGTGACTTGCATGAACAGCTTAGAAACCATGATTGGGAATCACTTCTAGA 1195
|| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GAGCGCGAGCAGTGACGTGCATGAACAGCTTAGAAACCATGATTGGGAAGCACTTCTAGA 1197
Query 1196 GAAAGATCAGCTTAAGATAGAACAAAGAGCTGGTAGAATTTTTAAGGGATGGGAAGAAGG 1255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 GAAAGATCAGCTTAAGATAGAACAAAGAGCTGGTAGGATTTTTAAGGGATGGGAAGAAGG 1257
Query 1256 GAAGATTTATTTCGCACCAACATATAAATATCGAATAAACTCTGATAATTACGTTGTCCA 1315
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 GAAGATTTATTTCGCACCAACGTATAAATATCGAATAAACTCTGATAATTACGTTGTTCA 1317
Query 1316 AACCGAAAAATCAAAGGAAAAACGAAGAACTCCGGCTTGGTGTGATCGGATATTGTGGAA 1375
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 AACCGAAAAATCAAAGGAAAAACGAAGAACTCCGGCTTGGTGTGATAGGATATTGTGGAA 1377
Query 1376 AGGTGACGGAATGAAACAACTTTGGTACGTGAGGGGAGAGTCGAAATTCTCGGACCA-CA 1434
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1378 AGGTGACGGAATGAAACAGCTTTGGTACGTGAGGGGAGAGTCGAAATTCTCGGACCATC- 1436
Query 1435 GACCGGTTCAATCTCTATTTTCGGTACATATTGACTTGA---AGAATCAATCGAACCGGA 1491
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1437 GACCGGTTCAATCTCTATTTTTGGTACATATTGACTTGACTCAGAATCAATCGAACCGGA 1496
Query 1492 AAACTAAACCGGTTAACCAAAATCATCGTCCAAACCCGGTATTGACTTATACGTGCCACG 1551
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1497 AAACTAAACCGGTTAACCAAAATCATCGTCCCAACCCGGTATTGCCTTATACGTGCCACG 1556
Query 1552 GGAAAGTTCAAGCTGAAGAGATCTTGTTGCTCACACGTGCACAGAGTTGTATAGATACAC 1611
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1557 GGAAAGTTCAAGCTGAAGAGATCTTGTTGCTCACGCGTGCACAGAGTTGTATAGATACCC 1616
Query 1612 TACCTAGACTTATTTCGTCCGCTTCCTAAttttcttttg-ttttttgtttcgatttcttt 1670
|||||||||||| ||||| |||||||||||| |||||| ||||||||||| ||||||||
Sbjct 1617 AACCTAGACTTATATCGTCTGCTTCCTAATTTACTTTTGGTTTTTTGTTTCTATTTCTTT 1676
Query 1671 ttggatgttttcATGTTGACAAAGAAGAGATGACACATGGATTCCTAGGATTGGACAATG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TTGGATGTTTTCATGTTGACAAAGAAGAGATGACACATGGATTCCTAGGATTGGACAATG 1736
Query 1731 GAGCTTTCAAATTTGGCAAAAGCAGGATTGTTTTAAATTATTTTAATATTGGGTTAACGT 1790
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1737 GAGCTTTCAAATTTGGCAAAAGCAGGATTGTTT-AAATTATTTTAATATTGGGTTA-C-- 1792
Query 1791 CtttttttGTTTGTTTCCCTCTATTAGCTAAGTTTTGGTTTAGA 1834
||||||| || |||||||||||||||||||||||||||| |||
Sbjct 1793 CTTTTTTCCTT-GTTTCCCTCTATTAGCTAAGTTTTGGTTCAGA 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5