BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37450.2
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901618 jgi|Araly1|901618|Al_scaffold_0004_2268 726 0.0
Ahg901619 jgi|Araly1|901619|Al_scaffold_0004_2269 684 0.0
> Ahg901618 jgi|Araly1|901618|Al_scaffold_0004_2268
Length=567
Score = 726 bits (393), Expect = 0.0
Identities = 515/572 (90%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 32 TTTCAGCCTCTTTCCTCTAtttttttGTTGAAATCCTCTAAATGATCTTGCAGAGATGGC 91
|||||| |||||||||||| |||| || |||| ||||| | ||||||||||||||||||
Sbjct 10 TTTCAGTCTCTTTCCTCTA-ATTTTGGTAGAAACCCTCTTAGTGATCTTGCAGAGATGGC 68
Query 92 ATGTATGAAGAAGGCACTACCATTCATTTTAATGGTATTGTTGCAAATAGGG-TATGCAG 150
||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||
Sbjct 69 ATGTATGAAGAAGGCACTACCATTCCTTTTAATGGTATTGTTGCAGATAGGGCTA-GCAG 127
Query 151 GAATGGATATTCTTACAAAGGATGTCCTAAACAAAGGCATGAGCATTTACGTTCTTTCCG 210
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 128 GAATGGACATTCTCACAAAGGATGCCCTAAACAAAGGCATGAGCATTTACGTTCTTTCCG 187
Query 211 TCTACCGTCACGGAGTTGCCACCGTTGTTATGGCTCCGTTCGCCTTCTACTTCGACAATC 270
||||||||||||| ||| | | || | || | | || || | | |
Sbjct 188 TCTACCGTCACGGCGTT-ATATC-AACTTCT--CT-CAAAAAAC--ATAATT---C-A-C 235
Query 271 CAGTGATTGCTCAAAACTTATTCAATCTCGGGATGAAATACACGACAGCTACATTTGCAA 330
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 CAGTGATCGCTCAAAACTTATTCAATCTGGGGATGAAATACACGACAGCTACATTTGCAA 295
Query 331 TTGCCTTGTACAACACTTTACCTGCAGTCACGTTCATCCTCGCCTTAATATTCAGGCTCG 390
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 TTGCCTTGTACAACACTTTACCTGCGGTCACGTTCATCCTCGCCTTAATATTCAGGCTCG 355
Query 391 AAAGCGTGAAGTTTCAAAGTATCAGGAGTGCCGCTAAGGTGGTTGGAACAGTAACTACAG 450
|||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 356 AAAGTGTGAAGCTTCAAAGTATCAGGAGTGCAGCTAAGGTGGTTGGAACAGTGACTACAG 415
Query 451 TTGGAGGAATCATGGTCATGACACTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGGAGGAATCATGGTCATGACACTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTA 475
Query 511 AAGGACCCTCTGCACAGAACACAGTTGGGACCGATATTCATAGCTCCATCAAAGGTGCAG 570
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 ACGGACCCTCTGCACATAACACAGTTGGGACCGATATTCATAGCTCCATCAAAGGCGCAG 535
Query 571 TTTTAGTCACAATTGGTTGCTTCAGCTATGCA 602
| || ||||| |||||||| ||||||||||||
Sbjct 536 TATTGGTCACCATTGGTTGTTTCAGCTATGCA 567
> Ahg901619 jgi|Araly1|901619|Al_scaffold_0004_2269
Length=1020
Score = 684 bits (370), Expect = 0.0
Identities = 554/642 (86%), Gaps = 16/642 (2%)
Strand=Plus/Plus
Query 414 AGGAGTGCCGCTAAGGTGGTTGGAACAGTAACTACAGTTGGAGGAATCATGGTCATGACA 473
||||| || | |||||||||||| ||| | |||| ||||||||| |||| ||||||||
Sbjct 292 AGGAGCGCGGGTAAGGTGGTTGGGACATTGGCTACTGTTGGAGGAGCCATGATCATGACA 351
Query 474 CTTGTAAAAGGTCCAGCTCTTGACCTCTTCTGGACTAAAGGACCCTCTGCACAGAACACA 533
||||| ||||| |||| | |||||||||| ||||| |||||| ||||||||| ||||||
Sbjct 352 CTTGTCAAAGGCCCAGTTGTTGACCTCTTTTGGACCAAAGGAGTCTCTGCACATAACACA 411
Query 534 GTTGGGACCGATATTCATAGCTCCATCAAAGGTGCAGTTTTAGTCACAATTGGTTGCTTC 593
| ||||||||| ||||||||| |||||||||| ||||| || ||||| |||||||| |||
Sbjct 412 GCTGGGACCGACATTCATAGCGCCATCAAAGGCGCAGTATTGGTCACCATTGGTTGTTTC 471
Query 594 AGCTATGCATGTTTCATGATACTACAAGCAATCACATTGAAG-ACTTACCCTGCAGAGCT 652
|||||||||||||||||||| |||||||| || ||||| ||| |||||||| || |||||
Sbjct 472 AGCTATGCATGTTTCATGATTCTACAAGCGATAACATT-AAGAACTTACCCCGCTGAGCT 530
Query 653 CTCTCTCGCAACATGGATATGCCTAATAGGTACAATAGAGGGAGTAGTTGTAGCATTAGT 712
||||||| || |||||||||||||||| || |||||||| ||| | || ||||||||
Sbjct 531 CTCTCTCACAGCATGGATATGCCTAATGGGGACAATAGAAGGAACCGCCGTGGCATTAGT 590
Query 713 GATGGAGAAAGGAAATCCTAGCGTG--TGGGCCATTGGTTGGGACACTAAACTTCTTACA 770
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 591 GATGGAGAAAGGAAATCC-CG-GTGCTTGGGCCATTGGTTGGGACACTAAACTTCTTACA 648
Query 771 ATCACCTATAGTGGGATAGTGTGCTCAGCGCTTGG-TTACTACATTGGAGGAGTGGTGAT 829
||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 649 GCCACCTATAGCGGGATAGTGTGCTCAGC-ATTGGCTTACTACGTTGGAGGAGTGGTGAT 707
Query 830 GAAAACCAGAGGTCCTGTGTTTGTAACAGCTTTCAAACCTCTTTGTATGATCGTTGTGGC 889
|||||||||||||||||||||||| |||||||||| ||||||||||||||| | || ||
Sbjct 708 GAAAACCAGAGGTCCTGTGTTTGTGACAGCTTTCAGTCCTCTTTGTATGATCATAGTAGC 767
Query 890 GATTATGTCGAGCATCATCTTTGATGAGCAGATGTACCTCGGAAGGGCTC-TTGGTGC-- 946
||||||||||| ||||||||||| ||||||||||||||| ||||||| || |||||||
Sbjct 768 GATTATGTCGACCATCATCTTTGCTGAGCAGATGTACCTTGGAAGGG-TCCTTGGTGCGG 826
Query 947 TACGGTCATATGTGTAGG-TCTATACCTTGTGATATGGGGCAAAGCCAAAGATTATGAAT 1005
|| | | ||||||| ||| | |||||||||||||||||||||||| ||||||||| ||
Sbjct 827 TA-GTT-ATATGTGCAGGAT-TATACCTTGTGATATGGGGCAAAGGCAAAGATTACAAAC 883
Query 1006 ATCCTAGCACGCCGCAAATAGATGATGACTTAGCACAAGCAA 1047
||| | ||||| ||||||||||||||| | ||||||| |||
Sbjct 884 ATCATTCCACGCTGCAAATAGATGATGAATCAGCACAACCAA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5