BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37470.1
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1 497 3e-140
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 342 1e-93
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 340 5e-93
Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1 302 2e-81
Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001 285 3e-76
> Ahg482740 jgi|Araly1|482740|fgenesh2_kg.4__1800__AT2G37470.1
Length=488
Score = 497 bits (269), Expect = 3e-140
Identities = 411/472 (87%), Gaps = 39/472 (8%)
Strand=Plus/Plus
Query 62 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAAGAAACCAGCCGGGAA 121
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 1 ATCTCTAATGGCGCCGAAAGCAGCGGAGAAGAAACCGGCAGAGAA-AAA--A-CC----- 51
Query 122 AGCTCCGGCGGAGAAACTCCCaaaggcggagaagaaaatcagcaaagacgccggaggaag 181
|| || | ||| || || || ||| | | ||||| || ||||| | |||| ||||
Sbjct 52 AG--CC-G-GGA-AAGCT-CC---GGC-G-G-AGAAACTC-CCAAAG--G-CGGA-GAAG 94
Query 182 cgagaagaagaagaagaaatcgaagaagagCGTCGAGACTTACAAGATCTACATCTTCAA 241
|| | || | |||| || || | ||||||||||||||||||||||||||||||||
Sbjct 95 -AAG-ATCAGCA-AAGACGCCGGAGCA-AGCGTCGAGACTTACAAGATCTACATCTTCAA 150
Query 242 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGGATTATGAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 151 GGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGAATTATGAA 210
Query 302 CAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGGTA 361
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 211 CAGTTTCATCAATGATATCTTCGAGAAACTTGCTCAGGAATCGTCAAAGCTCGCTAGATA 270
Query 362 CAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTGTTGCC 421
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 271 CAACAAGAAGCCGACGATTACATCGAGGGAGATTCAAACTGCTGTGAGACTTGTGTTGCC 330
Query 422 TGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 331 TGGAGAACTCGCTAAGCATGCGGTTTCAGAAGGCACGAAGGCGGTTACCAAATTCACCAG 390
Query 482 TTAGGGTTTTCCT--GT------AAATTTCCGGTT-AAGTGTTTGGTTTAGA 524
|||||||||| || || |||||| ||||| || |||||||||||||
Sbjct 391 TTAGGGTTTTTCTTTGTGTGTGTAAATTTTCGGTTTAATTGTTTGGTTTAGA 442
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 342 bits (185), Expect = 1e-93
Identities = 336/407 (83%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 87 GAGAAGAAACCGGCAGAGAAGAAA-C--CAGCCGGGAAAGCTCCGGCGGAGAA-ACTCCC 142
||||||||||| | ||| ||||| | ||||| |||||||||||||||||| | ||
Sbjct 97 GAGAAGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCA 156
Query 143 aaaggcggagaagaaaat-cagcaaagacgccggaggaagc-gagaagaagaagaagaa- 199
|||| ||| |||||| | | | ||||| ||||| | || ||| | |||||||||||
Sbjct 157 AAAGCCGG-CAAGAAACTCCCG-AAAGAAGCCGGCGCCGGCGGAG-ACAAGAAGAAGAAG 213
Query 200 at--cgaagaagagCGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTT 257
|| ||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 214 ATGAAGAAGAAGAGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTT 273
Query 258 CATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGGATTATGAACAGTTTCATCAATGAC 317
||||||||| |||||||||| | ||||||||||| || |||||||||||||| || ||
Sbjct 274 CATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGAT 333
Query 318 ATCTTCGAGAAACTTG-C-TCAGGAATCGTCAAAGCTCGCTAGGTACAATAAGAAGCCGA 375
|||||||||||| ||| | || ||||||||| ||||| |||||||| ||||||||||| |
Sbjct 334 ATCTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCAA 391
Query 376 CGATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCT 434
||||||| || ||||||||||| || ||||| |||||||| || ||||| || |||||
Sbjct 392 CGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTCGCG 450
Query 435 AAACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
||||| || ||||||||||| || ||||| || || |||||||||||
Sbjct 451 AAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAG 497
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 340 bits (184), Expect = 5e-93
Identities = 335/405 (83%), Gaps = 22/405 (5%)
Strand=Plus/Plus
Query 91 AGAAACCGGCAGAGAAGAAA-CC--AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCaaag 146
||||||| | |||| ||||| || ||||| |||||||||||| ||||| | || ||||
Sbjct 123 AGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAAAAG 182
Query 147 gcggagaagaaaat-cagcaaagacgcc-g-g-aggaagcgagaagaagaagaaga--aa 200
||| |||||| | | | ||||| ||| | | || |||| || |||||||||| ||
Sbjct 183 CCGG-CAAGAAACTCCCG-AAAGAAGCCGGCGCCGGCGGCGACAAAAAGAAGAAGATGAA 240
Query 201 tcgaagaagagCGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCAT 260
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 --GAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCAT 298
Query 261 CCAGATGTTGGAATCTCTGGG-AAAGCTATGGGGATTATGAACAGTTTCATCAATGACAT 319
|||||| |||| || || | | ||||||||||| || ||||||||||||||||| || ||
Sbjct 299 CCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATAT 357
Query 320 CTTCGAGAAACTTG-C-TCAGGAATCGTCAAAGCTCGCTAGGTACAATAAGAAGCCGACG 377
|||||||||| ||| | || ||||||||| ||||| || ||||| |||||||||||||||
Sbjct 358 CTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACG 415
Query 378 ATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAA 436
||||| || ||||||||||| || ||||| |||||||| || ||||| || || || ||
Sbjct 416 ATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAA 474
Query 437 ACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
||| || |||||||| || || |||||||| ||||||||||||||
Sbjct 475 ACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAG 519
> Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1
Length=698
Score = 302 bits (163), Expect = 2e-81
Identities = 310/379 (82%), Gaps = 17/379 (4%)
Strand=Plus/Plus
Query 113 AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCaaagg-cggagaagaaaat-cagcaaaga 169
||||| |||||||||||||||||| | ||||||| |||| |||||| | | | || ||
Sbjct 144 AGCCGAGAAAGCTCCGGCGGAGAAGA-AACCAAAGGCCGGA-AAGAAACTCCCG-AAGGA 200
Query 170 cgc-cg-g-aggaagcgagaagaagaagaaga--aatcgaagaagagCGTCGAGACTTAC 224
|| | | ||| | || |||||||| |||| || ||||||||| |||||||||||
Sbjct 201 GGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAA--GAAGAAGAGTATCGAGACTTAC 258
Query 225 AAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAA 284
|||||||||||||||||||| || || ||||||||||| ||| | |||||||| | |||
Sbjct 259 AAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAA 318
Query 285 GCTATGGGGATTATGAACAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCG 344
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 319 GCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCG 378
Query 345 TCAAAGCTCGCTAGGTACAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCT 404
|| ||||| || |||||||||||||| || || || || || |||||||||| || |||
Sbjct 379 TCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCT 438
Query 405 GTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGG 462
|||||| ||| || || |||||||| | || || ||||| |||||||| || || ||||
Sbjct 439 GTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGG 496
Query 463 CGGTTACCAAATTCACCAG 481
|||||||||||||||||||
Sbjct 497 CGGTTACCAAATTCACCAG 515
> Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001
Length=414
Score = 285 bits (154), Expect = 3e-76
Identities = 307/379 (81%), Gaps = 17/379 (4%)
Strand=Plus/Plus
Query 113 AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCaaagg-cggagaagaaaat-cagcaaaga 169
||||| |||||||||||||||||| | ||||||| |||| |||||| | | | || ||
Sbjct 36 AGCCGAGAAAGCTCCGGCGGAGAAGA-AACCAAAGGCCGGA-AAGAAACTCCCG-AAGGA 92
Query 170 cgc-cg-g-aggaagcgagaagaagaagaaga--aatcgaagaagagCGTCGAGACTTAC 224
|| | | ||| | || |||||||| |||| || ||||||||| |||||||||||
Sbjct 93 GGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAA--GAAGAAGAGTATCGAGACTTAC 150
Query 225 AAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAA 284
|||||||||||||||||||| || || ||||||||||| ||| | |||||||| | |||
Sbjct 151 AAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAA 210
Query 285 GCTATGGGGATTATGAACAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCG 344
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 211 GCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCG 270
Query 345 TCAAAGCTCGCTAGGTACAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCT 404
|| ||||| || |||||||||||||| || || || || || |||||||||| || |||
Sbjct 271 TCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCT 330
Query 405 GTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGG 462
|||||| ||| || || |||||||| | || || ||||| |||||||| || || ||||
Sbjct 331 GTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGG 388
Query 463 CGGTTACCAAATTCACCAG 481
| || || |||||||||||
Sbjct 389 CCGTCACGAAATTCACCAG 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22111291860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5