BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37478.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934405 jgi|Araly1|934405|scaffold_402393.1 920 0.0
Ahg345481 jgi|Araly1|345481|fgenesh1_pg.C_scaffold_4001823 806 0.0
Ahg934404 jgi|Araly1|934404|scaffold_402392.1 283 2e-75
Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1 152 7e-36
> Ahg934405 jgi|Araly1|934405|scaffold_402393.1
Length=619
Score = 920 bits (498), Expect = 0.0
Identities = 588/629 (93%), Gaps = 16/629 (3%)
Strand=Plus/Plus
Query 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641
|||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60
Query 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701
||||||||| | | ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114
Query 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173
Query 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819
|||| |||||| |||||||||| ||||||||||||||||| | ||||||||| |||||
Sbjct 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232
Query 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878
|| | |||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291
Query 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351
Query 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411
Query 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471
Query 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530
Query 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590
Query 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204
||||| | |||| | |||||||||||||
Sbjct 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619
> Ahg345481 jgi|Araly1|345481|fgenesh1_pg.C_scaffold_4001823
Length=576
Score = 806 bits (436), Expect = 0.0
Identities = 540/588 (92%), Gaps = 15/588 (3%)
Strand=Plus/Plus
Query 602 ATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAGACTTTGACATCTCTACTTCG 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGCTCTGTTTGTGGTAAGTTGGATTACAAAGATGCAGACTTTGACATCTCCACTTCG 60
Query 662 AGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGTTTACTGGCTCTGAAGATTCT 721
||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 AGTGCCACGCAATGTTCTAAAGGCTCGAAGAATACCTCGTTTACTGGCTCTGAAGATTCT 120
Query 722 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGTGAATGATGAAACCGCT 781
||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 121 CAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCAACTGCGAATGAAGGTACCGCT 180
Query 782 GTTCAGGATTTCGGCAAATCTGTTTTAAGTCCTAACTCTTCTGATGATGAAGACAAGGAT 841
| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATCAGGATTTCGGCAAATCCACTTTAAGTCCTAACTCTTCAGATGATGAAGACAAGGAT 240
Query 842 GAGAACCTTATGACTCAGACACCAATTGTTCTTATCCCAGCCATAAAAGGCAGTCGAGAG 901
||||| |||| |||| |||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 241 GAGAATCTTAAGACT---ACACCAGTTGTTCTCATCCCAGCCATAAAAGGCAGCCGAGAG 297
Query 902 AAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCATGGGGGGCTGATGTGTATGATCCT 961
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 298 AAGCATGGCTTGTCACTGAGGAAGTTGAGTGTTTCATGGGCGGCTGATGTGTATGATCCT 357
Query 962 CCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCAAGAAACAGC-AGCAGAAATCCAA 1020
|||||||||||||||| | | || |||||||||||||||||| | | |||||||| ||
Sbjct 358 CCTCCCTCGATAGCCT--C-C-CA--CACAAGAAGCAAGAAACAACTA-CAGAAATCAAA 410
Query 1021 GAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGACAGAAG-TCTAAAGACAACTCTT 1079
|||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 411 GAGCAAAGACAATCACAGGAAGACCGGAAAGAAAGGACAGAAGAGC-AAAGACAACTCTT 469
Query 1080 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGTCGAGACA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 470 CCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCTTCTCGCAAACACAGCCGCGAAA 529
Query 1140 AATTTGATTGGGTAACTCAGATGCC-TATAGTTGCAGCATCTTCATGA 1186
||||||| ||||||||||||||||| | |||||||||||||||| |||
Sbjct 530 AATTTGAATGGGTAACTCAGATGCCGT-TAGTTGCAGCATCTTCTTGA 576
> Ahg934404 jgi|Araly1|934404|scaffold_402392.1
Length=538
Score = 283 bits (153), Expect = 2e-75
Identities = 169/176 (96%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 274 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCCTG 333
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 366 GGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTC-T--TCTCCTT 422
Query 334 TCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 393
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTTTGATTCCTTCGTTGACTCCGTATCATTCTGGTTTGAGTTCTAATCGTTTGAAACCT 482
Query 394 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACAtttcctttccttcttctc 449
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 483 CTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAACATTTCGTTTCCTTCTCCTC 538
> Ahg485755 jgi|Araly1|485755|fgenesh2_kg.5__1747__AT3G53670.1
Length=1202
Score = 152 bits (82), Expect = 7e-36
Identities = 134/158 (85%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 272 AGGGTTTCGAAGAGCATAAGATAAGAATGCCTTCGGTGCCCTCTAAGCTTCTTCCTCTCC 331
||||| |||||||| || ||| || |||| | |||| ||||| || | | |||| | |
Sbjct 218 AGGGTATCGAAGAGGAT-AGAGAA-AATG-C--GGGTGTCCTCTGAGATAC-TCCT-T-C 269
Query 332 TGTCTTTGATTCCTTCGTTGACTCCTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 391
| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 270 TTTCTTTGGTTCCGGCGTTGACTTTTTATCATTCTGGTTTGAGTTCTAATCGTTTGAAAC 329
Query 392 CTCTTGAAAAGTGTGATTGGCGTGGTAATCTTAGTTAA 429
||||| ||||| ||||||||||||||||||||||||||
Sbjct 330 CTCTTCAAAAGAGTGATTGGCGTGGTAATCTTAGTTAA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5