BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37510.1
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934407 jgi|Araly1|934407|scaffold_402395.1 702 0.0
> Ahg934407 jgi|Araly1|934407|scaffold_402395.1
Length=470
Score = 702 bits (380), Expect = 0.0
Identities = 442/472 (94%), Gaps = 3/472 (1%)
Strand=Plus/Plus
Query 16 TCCTTTTGTCCCACTTGCTATAATGGCGTTCGTTTCCAGCTTTCGCCGTCTCGTTGCCGG 75
||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 1 TCC-TTTGTCCCACTTGCTACAATGGCGTTCGCTTCCAGCTTTCGCCGTCTCGTTGCTGG 59
Query 76 ATCCAGTAGCCTCTTGTCTTCTCCATCCTTGTGTGTTCGCCGCTGCTCAACTCTTACGTC 135
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 ATCCAACAGCCTCTTGTCTTCTCCATCCTTCTGTGTTCGCCGCTGCTCAACTCTTACGTC 119
Query 136 TCCCCGGCTCTTCGTTAGCGGTCTCTCCAGACTCACAACAAATGAAAAGCTTCAGGATGC 195
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCCAGGCTCTTCGTTAGCGGTCTCTCCAGACTCACAACAAATGAAAAGCTTCAGGATGC 179
Query 196 ATTTGCTTCTTTTGGACAGCTCGTCGATGCGAGAGTGATCACAGACAGAGATTCCGGGAG 255
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 180 ATTTGCTTCTTTTGGACAGCTCGTGGATGCGAGAGTGATCACAGACAGAGAGACCGGGAG 239
Query 256 ATCAAAGGGTTTTGGTTTTGTGACATATGCAACAATTGAAGATGCAGAGAAAGCCAAGGC 315
||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 240 ATCAAAGGGCTTCGGTTTTGTAACATATGCAACAATAGAAGATGCAGAGAAGGCCAAAGC 299
Query 316 AGAGATGAATGCAAAGTTCTTGGACGGTTGGGTAATTTTTGTTGATCCTGCAAGACCTAG 375
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 300 AGAGATGAATGCAAAGTTCTTGGATGGTTGGGTGATTTTTGTGGATCCTGCAAGACCTAG 359
Query 376 AGAACCAAGACGGCCTCTGCAACAGGAA-CCGCTTCGGCCTTCCTCCGAATCTGGTTTCA 434
|||||||||||||||||||||| ||| | |||| |||| ||||||| | |||||||||||
Sbjct 360 AGAACCAAGACGGCCTCTGCAA-AGGGAGCCGCCTCGGTCTTCCTCTGGATCTGGTTTCA 418
Query 435 CAACCAACAAAACCATCGGATGGTGTAAATGAACAAAATCCAACTACTTATG 486
||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 419 CAACCAACAAAACCATCGGCTGGTGTGAATGAACAAAATCCAACCACTTATG 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21443441018
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5