BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37530.1 Length=703 Score E Sequences producing significant alignments: (Bits) Value Ahg934409 jgi|Araly1|934409|scaffold_402397.1 512 1e-144 > Ahg934409 jgi|Araly1|934409|scaffold_402397.1 Length=419 Score = 512 bits (277), Expect = 1e-144 Identities = 366/408 (90%), Gaps = 10/408 (2%) Strand=Plus/Plus Query 71 CTTTTAAGAACTTAAAACCAATGATTCGCCATAT-GTTCTCCTCTCTGACTCACAGATTC 129 ||||||| ||||| |||||||||||||||||| | | |||| |||||||| ||| | ||| Sbjct 1 CTTTTAAAAACTTTAAACCAATGATTCGCCATCTAG-TCTCATCTCTGACCCACCGCTTC 59 Query 130 GCATGGCGGATTCCACA-CTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGTTAAC 188 |||||||||||||| | |||||||||||||||||||||||||||||||||||| | || Sbjct 60 GCATGGCGGATTCC-GATTTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGATGAC 118 Query 189 GGTGGCTATCATCTCGCTTGCACCGGAATTCGCTTTCGTGTCGGCGATTTTCCCG---TC 245 |||||| |||||||| || |||||||||||||||||||||||||| ||||||||| || Sbjct 119 GGTGGCGATCATCTCTCTCGCACCGGAATTCGCTTTCGTGTCGGCTATTTTCCCGTCATC 178 Query 246 TTCTTC-T--GAGGTGTTCTCGCGGCGGTGCGGTTCTTATGCAGCCATATTGGTTCCGCT 302 |||||| | | || |||||| ||||||||||| ||||| |||||| | ||||| ||| | Sbjct 179 TTCTTCTTCGGTGGAGTTCTCTCGGCGGTGCGGCTCTTACGCAGCCGTTTTGGTGCCGTT 238 Query 303 GGATCTTCCCTCGGAGGTCTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA 362 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGATCTTCCTTCGGAGGTGTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA 298 Query 363 CCTCGTTGTGCCGCCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTAAG 422 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 299 CCTCGTTGTGCCACCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTCCG 358 Query 423 GACTATGGGCCTTTGGGAGGCCGACGAAGCCCATTAATTTAGGCCCAT 470 |||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 359 AACTATGGGCCTTTGGGAGGCTGAAGAAGCCCATTAATTTAGGCCCAT 406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25847337726 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5