BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37530.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934409 jgi|Araly1|934409|scaffold_402397.1                        512    1e-144


> Ahg934409 jgi|Araly1|934409|scaffold_402397.1
Length=419

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 366/408 (90%), Gaps = 10/408 (2%)
 Strand=Plus/Plus

Query  71   CTTTTAAGAACTTAAAACCAATGATTCGCCATAT-GTTCTCCTCTCTGACTCACAGATTC  129
            ||||||| ||||| |||||||||||||||||| | | |||| |||||||| ||| | |||
Sbjct  1    CTTTTAAAAACTTTAAACCAATGATTCGCCATCTAG-TCTCATCTCTGACCCACCGCTTC  59

Query  130  GCATGGCGGATTCCACA-CTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGTTAAC  188
            ||||||||||||||  |  |||||||||||||||||||||||||||||||||||| | ||
Sbjct  60   GCATGGCGGATTCC-GATTTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGATGAC  118

Query  189  GGTGGCTATCATCTCGCTTGCACCGGAATTCGCTTTCGTGTCGGCGATTTTCCCG---TC  245
            |||||| |||||||| || |||||||||||||||||||||||||| |||||||||   ||
Sbjct  119  GGTGGCGATCATCTCTCTCGCACCGGAATTCGCTTTCGTGTCGGCTATTTTCCCGTCATC  178

Query  246  TTCTTC-T--GAGGTGTTCTCGCGGCGGTGCGGTTCTTATGCAGCCATATTGGTTCCGCT  302
            |||||| |  | || |||||| ||||||||||| ||||| |||||| | ||||| ||| |
Sbjct  179  TTCTTCTTCGGTGGAGTTCTCTCGGCGGTGCGGCTCTTACGCAGCCGTTTTGGTGCCGTT  238

Query  303  GGATCTTCCCTCGGAGGTCTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA  362
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  239  GGATCTTCCTTCGGAGGTGTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA  298

Query  363  CCTCGTTGTGCCGCCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTAAG  422
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  299  CCTCGTTGTGCCACCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTCCG  358

Query  423  GACTATGGGCCTTTGGGAGGCCGACGAAGCCCATTAATTTAGGCCCAT  470
             |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  359  AACTATGGGCCTTTGGGAGGCTGAAGAAGCCCATTAATTTAGGCCCAT  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5