BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37540.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934410 jgi|Araly1|934410|scaffold_402398.1 1652 0.0
> Ahg934410 jgi|Araly1|934410|scaffold_402398.1
Length=1011
Score = 1652 bits (894), Expect = 0.0
Identities = 969/1006 (96%), Gaps = 1/1006 (0%)
Strand=Plus/Plus
Query 125 agagagagagagagagagagaTCATGGGAATATATGGAGTGATGACAGGGAAAAAAGGAA 184
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3 AGAGAGAGAGAGATAGAGAGATCATGGGACTATATGGAGTGATGACAGGGAAAAAAGGAA 62
Query 185 AGAGTGGGTTTGGATCTGCTTCTACTGCTGAAGATGTTACTCAAGCCATTGATGCCAGTC 244
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 63 AGAGTGGATTTGGATCTGCTTCTACTGCTGAAGATGTTACTCACTCTATTGATGCCAGTC 122
Query 245 ATCTCACTGCCATCATCACAGGTGGAACAAGTGGGATTGGATTGGAGGCAGCTAGAGTGT 304
||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 123 ATCTCACTGCCATTATCACAGGTGGAACAGGTGGGATTGGATTGGAGGCAGCAAGAGTGT 182
Query 305 TAGCAATGAGAGGAGCTCATGTCATCATTGCCGCAAGAAACCCAAAAGCTGCTAATGAGT 364
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 183 TAGCAATGAGAGGAGCTCATGTCATCATTGCCGCAAGAAACACAAAAGCTGCTAATGAAT 242
Query 365 CTAAAGAGATGATTCTTCAGATGAACCCTAATGCTCGCGTCGACTATCTCCAGATCGATG 424
|||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||
Sbjct 243 CTAAAGAGATGATTCTTCAGATGAACCCTAATGCTCGCGTAGAGTATATCCAGCTCGATG 302
Query 425 TCTCTTCCATCAAATCAGTCAGATCCTTCGTTGATCAGTTTCTTGCCCTTAATGTTCCTC 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 303 TCTCTTCCATCAAATCAGTCAGATCCTTCGTCGATCAGTTTCTTGCCCTTAATGTTCCTC 362
Query 485 TCAACATTCTCATAAACAATGCAGGTGTTATGTTTTGTCCTTTCAAGCTCACCGAAGATG 544
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 363 TCAACATACTCATAAACAATGCAGGTGTTATGTTTTGTCCTTTCAAGCTCAGTGAAGATG 422
Query 545 GGATTGAATCACAATTCGCAACAAACCACATTGGTCATTTTCTGTTGACGAATCTGCTTC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGATTGAATCACAATTCGCAACAAACCACATTGGTCATTTTCTGTTGACGAATCTGCTTC 482
Query 605 TGGACAAAATGAAAAGTACCGCAAGAGAAAGTGGAGTCCAAGGAAGGATTGTGAATCTGT 664
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 483 TGGACAAAATGAAGAGTACCGCAAGAGAAAGTGGAGTCCAAGGAAGGATTGTGAATTTGT 542
Query 665 CATCTATTGCTCATACTTATACTTACTCTGAAGGTATCAAGTTCCAAGGCATCAATGACC 724
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 543 CATCTATTGCTCATACTTATACTTACCCTGAAGGTATCAAGTTCCAAGGCATCAATGACC 602
Query 725 CTGCTGGATATTCGGAGAGAAGGGCTTATGGACAGTCCAAACTCTCAAACTTGTTGCACT 784
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 CTGATGGATATTCGGAGAGAAGGGCTTATGGGCAGTCCAAACTCTCAAACTTGTTGCACT 662
Query 785 CCAATGCACTCTCTCGTAGACTACAGGAAGAAGGTGTGAACATCACTATAAATTCGGTGC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CCAATGCACTCTCTCGTAGACTACAGGAAGAAGGTGTGAACATCACTATAAATTCGGTGC 722
Query 845 ACCCTGGTCTTGTCACCACTAATCTCTTTCGCTACTCCGGTTTTAGCATGAAGGTCTTCA 904
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 723 ACCCTGGACTTGTCACCACTAATCTCTTTCGCCACTCCGGTTTTAGCATGAAGGTCTTCA 782
Query 905 GGGCTATGACTTTCCTCTTTTGGAAAAATATACCTCAGGGAGCAGCAACAACATGCTACG 964
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 783 AGGCTATGACTTTCCTCTTATGGAAAAATATTCCTCAGGGAGCAGCAACAACATGCTACG 842
Query 965 TTGCACTTCATCCAGATCTCGAAGGCGTCACCGGAAAGTATTTCGGCGACTGTAACATCG 1024
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTGCACTTCATCCTGATCTCGAAGGCGTCACCGGAAAGTATTTCGGCGACTGTAACATCG 902
Query 1025 TTGCTCCGAGCAAATTTGCTACCAACAATTCTCTCGCCGATAAACTTTGGGATTTCAGTG 1084
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TTACTCCGAGCAAATTTGCTACCAACAATTCTCTCGCCGATAAACTTTGGGATTTCAGTG 962
Query 1085 TCTTTCTCATCGATTCTATCTCTAAATAA-TCTATCATCATCAAGA 1129
|| |||||||||||| ||||||||||| | ||||||||||||||
Sbjct 963 TCAAACTCATCGATTCTGTCTCTAAATAAATTTATCATCATCAAGA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5