BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37550.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482750 jgi|Araly1|482750|fgenesh2_kg.4__1810__AT2G37550.1 2809 0.0
> Ahg482750 jgi|Araly1|482750|fgenesh2_kg.4__1810__AT2G37550.1
Length=1836
Score = 2809 bits (1521), Expect = 0.0
Identities = 1750/1855 (94%), Gaps = 38/1855 (2%)
Strand=Plus/Plus
Query 9 CACGTGACAAAAACACGCACAAAATTATTC-AAGTTACCACGTTTATTAAGCAAA-ACGA 66
|||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||
Sbjct 1 CACGTGACAAAAACACGCACAAAACTA-TCAAAGTTACCACGTTTATTAAGCAAAGACGA 59
Query 67 TTGAGCC--aaaaaaa---a-C-G---CATCAGAATCTGGAACCTGGATCAGATCTAGTC 116
|| |||| ||||||| | | | |||||||||| ||||||||||||||||||| ||
Sbjct 60 TTAAGCCAAAAAAAAACGCATCAGTCTCATCAGAATCCGGAACCTGGATCAGATCTATTC 119
Query 117 -AG--GGGTCAGATCGGAGAGCCGGCAATATAATGGCAGCGGCGAGACGATTACGGACGC 173
| |||||| |||||| | ||||||| |||||||| ||||||||||||||||||||||
Sbjct 120 GGGTCGGGTCATATCGGAAAACCGGCAACATAATGGCGGCGGCGAGACGATTACGGACGC 179
Query 174 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCAATCTCAGCCGGAGAACAAGGTCTGTGTCGATTGCTCCCAGAAGAATCCACAATGGG 239
Query 234 CATCGATTTCATATGGAATCTTCATGTGCTTGGAATGCTCCGGTAAGCACCGTGGTTTAG 293
||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 240 CATCGGTTTCATATGGAATCTTCATGTGCTTGGAGTGCTCCGGTAAGCACCGTGGCTTAG 299
Query 294 GTGTTCACATCTCATTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 353
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTGTTCACATCTCCTTCGTCAGATCCGTCACCATGGATTCATGGTCCGAGATCCAGATCA 359
Query 354 AGAAAATGGACGCTGGAGGCAACGAGCGTCTCAACAATTTTCTCGCTCAGTACGGGATCT 413
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 360 AGAAAATGGACGCCGGAGGCAACGAGCGTCTCAACAAATTTCTGGCTCAGTACGGGATCT 419
Query 414 CGAAAGAGACTGATATCATCTCCAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 473
| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 420 CTAAAGAGACCGATATCATCGCAAAGTACAATTCCAACGCCGCGTCTGTGTATCGAGATC 479
Query 474 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGATCCAAGCTTTAGCTGAGGGAAGACAATGGAGAGATCCGCCGATTGTTAAGGAATCGG 539
Query 534 TTGGTGGTGGATTGATGAATAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 593
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGTGGTGGAGGGATGATTAAGAAGCCTCCGTTGTCTCAAGGCGGTGGTAGAGATTCTG 599
Query 594 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTTAGATCTACGGATATGAGGA 653
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 600 GTAATGGTGGATGGGATAATTGGGATAACGATGATTCGTTCAGATCTACGGATATGA-GA 658
Query 654 -GGAATCAATCGGCGGGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCGAAGTCG 712
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 CGGAATCAATCGGCGAGTGATTTTAGGTCATCGGGAGGTCGTGGTGCTCCGGCAAAGTCG 718
Query 713 AAATCGTCTGAGGATATATATTCACGGTCTCAGCTGGAGGCGTCGGCGGCGAATAAGGAG 772
|||||||| ||||||||||| || |||||||||||||| || ||||||||||||||||||
Sbjct 719 AAATCGTCGGAGGATATATACTCTCGGTCTCAGCTGGAAGCTTCGGCGGCGAATAAGGAG 778
Query 773 AGTTTCTTTGCGAAAAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 832
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTTTCTTTGCGAAGAGGATGGCTGAGAATGAGTCTAAGCCTGAGGGACTTCCTCCTTCA 838
Query 833 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCAGGTCCAGCTCCGAGAAGCAATCAA 892
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 CAAGGTGGTAAGTATGTTGGGTTTGGATCTAGTCCCGGTCCAGCTCCGAGAAGCAATCAA 898
Query 893 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGAGTGGTGGTGGTGATGTTTTCTCTGTTATGTCTGAGGGTTTTGGAAGATTGTCTCTT 958
Query 953 GTTGCTGCATCAGCTGCAAATGTTGTTCAGACTGGAACCATGGAGTTTACTTCCAAGGTC 1012
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 959 GTTGCTGCATCAGCTGCGAATGTTGTTCAAACTGGAACCATGGAGTTTACTTCCAAGGTT 1018
Query 1013 AAAGAAGGTGGCTTAGATCAGACGGTCAGTGAGACTGTTAATGTTGTTGCGAGTAAGACA 1072
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 AAAGAAGGTGGCTTAGATCACACGGTCAGTGAGACAGTTAATGTTGTTGCGAGTAAGACA 1078
Query 1073 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTGATGGCAATTGCCTCACAA 1132
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 ACAGAGATAGGACAGAGGACATGGGGGATCATGAAAGGAGTAATGGCAATTGCCTCACAA 1138
Query 1133 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACTGAG 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1139 AAGGTTGAAGAGTTCACTAAAGAAGAAGCATCAACTTGGAATCAACAGAATAAAACCGAG 1198
Query 1193 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGCAACGGTTACTACCAGAACTCTGGGATTGGAAACAAAACAGCAAATTCATCTTTTGGA 1258
Query 1253 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGATCACAATCATCATCAAGTGGTCACAACAACAGTTATCGTAACTCGAATTCTTGGGAT 1318
Query 1313 GACTGGGGAGAAGAGAACAATAGCAAAAAGGAAGCAGCACCAAAGGTGTCGACTTCTAAT 1372
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1319 GACTGGGGAGAAGAGAACAATACCAAAAAGGAAGCAGCACCAAAGGTGACGACTTCTAAT 1378
Query 1373 GATGATGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTC 1432
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GATGACGACGACGGCGGTTGGGCTGGTTGGGATGATAATGATGCTAAAGATGATGATTTT 1438
Query 1433 TATTATCAGCCTGCAAGCGATAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1492
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TATTATCAGAGTGCAAGCGAGAAGAAATCTGTAGGTCACAATGGGAAATCAGACACTGCT 1498
Query 1493 TGGACCGGTGGAGGTTTTCTCTAACGGTGTTACAGGATAATGGTGAATGAAGTTTGTACA 1552
||||||||||||||||||||||| |||| || ||||||||| || | | ||
Sbjct 1499 TGGACCGGTGGAGGTTTTCTCTAGCGGTATTTCAGGATAAT--TG--T-A--------CA 1545
Query 1553 ATTAAGGAATAGCAGAGCCT-GTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1611
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1546 ATTAAGGAAAAGCAGAACCTTGTGGTCTTCTCGTGCTCTGTCACAAGAGAGAGCAGAGTG 1605
Query 1612 GTCATCTCAACCATTAA-GCCACCACTGGT-CTTTCTTTTCACATATCAATTGCTTGGCG 1669
||||||||||||||||| |||| || ||| ||| |||| ||||||||||||||||||||
Sbjct 1606 GTCATCTCAACCATTAAAGCCATCAAAGGTTCTT-CTTTCCACATATCAATTGCTTGGCG 1664
Query 1670 TTCAATCAAATCGATCGTCACTATTTGTTCTTCTACAATATATATAGtttttttttttAT 1729
|||||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||
Sbjct 1665 TTCAATCAAATCGATCGTCATTATTTGTTCTTCTACAATATATA--GTTTCATTTAT-AT 1721
Query 1730 TTGTACAAGTTTCACAGTCACAGAGGATTGCTTGCTAAACTATTCGGGTTAGTCTTCAGC 1789
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1722 TTGTACAAGCTTCACAGTCACAGAGGACTGCTTACTAAACTATTCGGGTTAGTCTTCAGC 1781
Query 1790 TCtttttttGAGATTCAAACTTTTATTTTTCTTGAAATTTGTAATGATCACAAAA 1844
||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1782 TCTTTTTTTGAGATTCAAACTTTTATTTTTCTTCAAATCTGTAATGACCACAAAA 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5