BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37560.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482752 jgi|Araly1|482752|fgenesh2_kg.4__1812__AT2G37560.1 1821 0.0
Ahg485242 jgi|Araly1|485242|fgenesh2_kg.5__1234__AT3G48880.2 73.1 5e-12
> Ahg482752 jgi|Araly1|482752|fgenesh2_kg.4__1812__AT2G37560.1
Length=1174
Score = 1821 bits (986), Expect = 0.0
Identities = 1093/1145 (95%), Gaps = 6/1145 (1%)
Strand=Plus/Plus
Query 266 GAAAATGGAGGACATTGAGAACATAGAAGAAGATGAGTATGGGTTTTCAAGAAACTACTT 325
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 30 GAAAATGGAGGACATTGAGAACATGGAAGAAGATGAGTATGGCTTCTCAAGAAACTACTT 89
Query 326 CTTGGCAAAAGAATTGGGTGGGGCGAGTAAGCGTTCTGCCCACAAGCTCTCTGATATACA 385
||||||||||||||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct 90 TTTGGCAAAAGAATTGGGTGGGGCCAGTAAGCGGTCAGCTCACAAGCTCTCTGATATTCA 149
Query 386 TATTGTTGATGAGCAGGAGCTTAGAGAAACGGCTTCTACAATTGAAATGAAGCACTCGAA 445
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 150 TATTGTTGATGAGCAGGAGCTTAGAGAAACAG------CAATTGAAATGAAGCACGCGAA 203
Query 446 AGAGATATCTGAGCTTATGAGTGATTACAAGACTATGTACTCAAAGTGGGTCTTTGAGCT 505
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 204 AGAGGTATCTGAGCTTATGAGTGATTACAAGACTATGTACTCAAACTGGGTCTTTGAGCT 263
Query 506 CAGGTGTGGCTTTGGCCTTCTAATGTATGGCTTTGGATCTAAGAAAGCTTTAGTTGAAGA 565
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 264 CAGGTGTGGCTTTGGCCTTCTAATGTATGGCTTTGGATCTAAGAAAGCTTTAATTGAAGA 323
Query 566 TTTTGCTTCTGCTTCTTTGACTGACTATTCTGTTGTGGTCATCAATGGCTACCTCCCTTC 625
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 324 TTTTGCTTCTGCTTCTTTGACTGAGTATTCGGTTATGGTCATCAATGGCTACCTCCCTTC 383
Query 626 CGTAAATCTAAAGCAGGTTCTTTTGGCATTAGCTGAACTTCTATCCGAGCTTTTGAAATG 685
|||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 384 CGTAAATCTAAAGCAGGTTCTTTTAGCTTTAGCTGAACTTCTGTCTGAGCTTTTGAAATG 443
Query 686 TAAAAGAAAGAGTTCCGGGAGTTTGTCTAAAGGTCAAGAAACATTTCCTTCACGCTCCAT 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TAAAAGAAAGAGTTCCGGGAGTTTGTCTAAAGGTCAAGAAACATTTCCTTCACGCTCCAT 503
Query 746 GGATGATATTCTTTCCTTTCTACATGGTCCACAGTCTGGAGATAAAGACTGCTTCATATG 805
||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 504 GGATGATATTCTTTCCTTTCTACATGGTCCACAATCCGAAGATAAAGACTGCTTCATATG 563
Query 806 CGTTGTTGTTCATAACATTGACGGCCCTGCTCTAAGAGATCCCGAATCACAACAAACTCT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CGTTGTTGTTCATAACATTGACGGCCCTGCTCTAAGAGATCCCGAATCACAACAAACTCT 623
Query 866 TGCCCGGCTTTCTTCTTGTTCACACATACGCTTGGTTGCCTCTATTGACCATGTCAACGC 925
|||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 624 TGCCCGACTTGCTTCTTGTTCACACATACGCATGGTTGCCTCTATTGACCATGTCAACTC 683
Query 926 TCCATTATTGTGGGACAAGAAAATGGTGCACAAACAGTTTAACTGGCTATGGCACCATGT 985
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 684 TCCATTATTGTGGGACAAGAAAATGGTGCACAAACAATTCAACTGGCTGTGGCACCATGT 743
Query 986 TCCAACATTTGCACCATACAATGTCGAAGGTGTATTCTTCCCGTTGGTTCTTGCACAGGG 1045
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 744 TCCAACATTTGCACCATACAATGTCGAAGGTGTTTTCTTCCCGTTGGTTCTTGCACAGGG 803
Query 1046 AAGCACAGCCCAAACCGCCAAAACAGCAGCCATTGTTTTACAGAGTTTAACACCAAACGG 1105
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 804 AAGCACAGCCCAAACCGCCAAAACAGCAGCCATTGTCTTACAGAGTTTAACACCAAATGC 863
Query 1106 TCAGAATGTCTTCAAGATTCTTGCTGAGTACCAACTTTCACACCCAGATGAAGATGGGAT 1165
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 864 TCAGAATGTCTTCAAGATTCTTGCAGAGTACCAACTTTCACACCCAGATGAAGATGGCAT 923
Query 1166 GCCCACTGATGATCTGTATTCAGCGTCTCGGGAACGCTTCTTTGTGAGCAGTCAAGTGAC 1225
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 924 GCCCACTGATGATCTGTATTCAGCCTCTCGGGAACGCTTCTTTGTGAGCAGTCAAGTGAC 983
Query 1226 TTTAAACTCTCATCTCACGGAATTTAAAGACCACGAACTGGTTAAGACCAAGAGAAACTC 1285
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TTTGAACTCTCATCTCACGGAATTTAAAGACCACGAACTGGTTAAGACCAAGAGAAACTC 1043
Query 1286 CGATGGTCAAGAGTGTTTGAATATACCGCTCACTTCGGATGCAATTCGACAGCTTTTGCT 1345
||||||||||||||||||||||||||| ||| |||| |||||| |||||||||| |||||
Sbjct 1044 CGATGGTCAAGAGTGTTTGAATATACCTCTCTCTTCAGATGCACTTCGACAGCTCTTGCT 1103
Query 1346 TGATCTCAATCAGTAGCCTGAAATTGTATTTCTGATATGATTCATTTTTATTGCTTGAAC 1405
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1104 TGATCTCAATCAGTAGCATGAAATTGTATCTCTGATATGATTCATTTTTATTGCTTGAAC 1163
Query 1406 GAGTT 1410
|||||
Sbjct 1164 GAGTT 1168
> Ahg485242 jgi|Araly1|485242|fgenesh2_kg.5__1234__AT3G48880.2
Length=1098
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 156 ATTGTAACGGTGTCGTCGTCGCCAAACGATTTGCCTCTT 194
|||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATTGTAACGGTGTCGTCGTCGCCAAACGATTTGCCTCTT 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5