BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37580.1
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345494 jgi|Araly1|345494|fgenesh1_pg.C_scaffold_4001836 874 0.0
> Ahg345494 jgi|Araly1|345494|fgenesh1_pg.C_scaffold_4001836
Length=939
Score = 874 bits (473), Expect = 0.0
Identities = 625/696 (90%), Gaps = 19/696 (3%)
Strand=Plus/Plus
Query 18 ATGTTCAATAATACAACAACCTCCTTCGGCTCCGGCCCCGGCATCGTCGTCGTCCCAACT 77
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct 1 ATGTTCAATAATACAACAACAACCTTCGGCTCCGGCGCCGGCGTCGTCGTCGTCCCACCT 60
Query 78 CCCGCCACAACAGTTCCCACCACCGACTTCCCCGGTACCACCATCACTTCCAACTCCACC 137
|||||| ||| |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct 61 CCCGCCGTTACAATTCCCACCCCCGTCTTCCCCGGCACCACCATCACTTCCAATTCCACC 120
Query 138 TTCATTATCATCGGACCTCCACCACCGTTCCCAGCTCCTCCCCGGAGCATCGACCTTACT 197
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 121 TTCATCATCATCGGACCTCCACCACCGTTCCCAGCTCCTCCACGGAGCATCGACCTTTCT 180
Query 198 CCTCTCAAACTAATCTTCGTCGTCATCGCCTTCGTCGCCGTTCCCGCTTTAGTTTACGCT 257
||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 181 CCTCTCAAACTAATCTTCGCCGTCATCGCCATCGTCGCCGTTCCCGCTTTAGCTTACGCT 240
Query 258 CTCTTCTTCAACGGCCCATGTTCTTCCTCCCGCCGCAACTCCTCTTC-T-TC-CCGCACC 314
|||||||||| | |||| ||||||||||||||||||||||||||||| | || ||||| |
Sbjct 241 CTCTTCTTCACCAGCCCTTGTTCTTCCTCCCGCCGCAACTCCTCTTCATCTCGCCGCAGC 300
Query 315 AGCTCTTCCTCCGACGATACACCTCACGCCACCGTCG--A-CACCCCGCCGAT--CA-CC 368
||| |||||||||||||||||||||||| |||||||| | |||||||||||| || ||
Sbjct 301 AGCACTTCCTCCGACGATACACCTCACGTCACCGTCGATATCACCCCGCCGATCACATCC 360
Query 369 GAGACCACCGTAACTTCGGAATCCGGAGGGAAATTCCACAAAGATACACATTCTAAAGAG 428
||||||||||||||| | || ||||| |||||| |||| |||||||||||||| || |||
Sbjct 361 GAGACCACCGTAACTCCTGACTCCGGCGGGAAAATCCAAAAAGATACACATTCCAAGGAG 420
Query 429 ATTGGAAACGAGTGCTCCGTGTGTCTCATGGTGTTCACCGACAGCGATGAACTCCGGCAA 488
|| |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 ATCGGAAACGAGTGCACCGTGTGTCTCATGGTGTTCACCGACGGCGATGAAATCCGGCAG 480
Query 489 CTAAGCGAGTGTAAACACGCGTTCCACGTGTTATGTATTG-AGACGTGGCTTAAGGATCA 547
|| | ||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 481 CTTATCGAGTGTAAGCACGCGTTCCACGTGTCGTGTATTGAAGA-GTGGCTTAAGGATCA 539
Query 548 TCCTAATTGTCCCATTTGTCGAACTGACGTCTCCGTTAAACAACAAACCGAAGCTCCCAA 607
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 540 TCCTAATTGTCCCATTTGCCGAACTGACGTCTCCGTTAAACAACAGACCGAAGCAGCCAA 599
Query 608 CGTTC-CCGTTAACGTTAACGGAAACGTGAATCGCAGCGGCGGAAACCGTCGCGTTTCGG 666
||| | |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 600 CGT-CACCGTTAACGTTAACGGTAACGTGAATCGCAGCGGCGGAAACCGTCGAGTTTCAG 658
Query 667 CCACTAGTA------GAGATGACGATTGGCGTCAAG 696
| |||| || |||||||||||||||||||||
Sbjct 659 CGACTAATAATAATAGAGATGACGATTGGCGTCAAG 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30536456517
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5