BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37585.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345499 jgi|Araly1|345499|fgenesh1_pg.C_scaffold_4001841 1037 0.0
Ahg345494 jgi|Araly1|345494|fgenesh1_pg.C_scaffold_4001836 311 1e-83
Ahg925371 jgi|Araly1|925371|scaffold_200932.1 291 1e-77
> Ahg345499 jgi|Araly1|345499|fgenesh1_pg.C_scaffold_4001841
Length=672
Score = 1037 bits (561), Expect = 0.0
Identities = 622/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 585 GATATTTTGCATATATTCTCATACTTGCCACGCTACCTGAACTTTATCGAGCACACAAGC 644
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 22 GATATTTTACATATTTTCTCATACTTGCCGCGCTACCTGAACTTTATCGAGCATACAAGC 81
Query 645 AACATCGGTTGGAAAGAGAACCAAAGAGCAAGGCCTATCATTATTGATCCTGGTTTTTAC 704
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 82 AACATCGGTTGGAAAGAGAACCAAAGAGCAAGGCCTATCATTATCGATCCTGGCTTTTAC 141
Query 705 CATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTC 201
Query 765 AAACTTTTCATGGGTTCAACCAGCGTTGCTTTAACAAGACCGTTCCTCGAGTTTTGCATT 824
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 202 AAACTTTTCATGGGTTCAACCAGCGTCGCTTTAACAAGACCGTTCCTCGAGTTTTGTATT 261
Query 825 TGGGGATGGGATAATCTCCCAAGAACGCTATTGATGTACTATACCAACTTCCTCTTGTCA 884
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 262 TGGGGATGGGACAATCTCCCAAGAACGCTATTGATGTACTATACCAACCTCCTCTTGTCA 321
Query 885 TCTGAAGGCTACTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTT 944
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ACCGAAGGCTATTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTT 381
Query 945 AACCACGACCTGCATTACACAAAATGGGATCCGCTTCAACAGCGCACCCTGAATGTAACG 1004
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 382 AACCATGACCTGCATTACACAAACTGGGATCCGCTTCAACAGCGCACCCTGAATGTAACA 441
Query 1005 GTTGAGAATTTCCGCGATATGGTCCAAAGCGGGGCTCCATTCGCAAGGGAGTTTCGAGAG 1064
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 442 GTTGAGAATTTCCGCGATATGGTCCAAAGCGGCGCTCCATTTGCAAGGGAGTTCCGAGAG 501
Query 1065 GATGATCTTGTACTCGATAAGATTGACATTGAGCTACTAGGTCAAACCGATACTGGATTG 1124
|||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 502 GATGATCTCGTACTCGATAAGATTGACAACGAGCTGCTAGGTCAAACCGATAGTGGATTG 561
Query 1125 GAGTTGAAGACTCCGGATG-TTGTTAAACCAACGGTTAGTTGGAAGAGGCTTGAGAAGCT 1183
| |||||| | |||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 562 GGGTTGAATATTCCGGA-GATTGTTAAGCCAACGGTTAGTTGGAAGAGGCTTGAGAAGCT 620
Query 1184 CATGGTTAGGCTTCTTGATCATGAGAATTTCAGGGCTAAGCAATGTAAATAA 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CATGGTTAGGCTTCTTGATCATGAGAATTTCAGGGCTAAGCAATGTAAATAA 672
> Ahg345494 jgi|Araly1|345494|fgenesh1_pg.C_scaffold_4001836
Length=939
Score = 311 bits (168), Expect = 1e-83
Identities = 190/201 (95%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 194 AGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTCCGAG 253
|||||||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||
Sbjct 693 AGATTCATCCTCCGGTTTAGCTCCAAATCGGAACTTATCCAGAACATCGAAGATTCCGAG 752
Query 254 GTTTGCGTATTTGGTAACGGGAACGAAAGGAGATGGGAAACGAGTGAAGCGGCTGCTTAA 313
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 753 GTTTGCGTATTTGGTAACGGGAACGAAAGGAGATTGGAAACGAGTGAAGCGGCTGCTTAA 812
Query 314 AGCAATACATCATCCGAGAAATTACTATCTGCTTCATTTGGATCTCGAAGCTTCAGATGA 373
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 813 TGCAATACACCATCCGAGAAACTACTATCTTCTTCATTTGGATCTCGAAGCTTCATATGA 872
Query 374 AGAGAGAATGGAGCTGGCGAA 394
|||||||||||||||||||||
Sbjct 873 AGAGAGAATGGAGCTGGCGAA 893
> Ahg925371 jgi|Araly1|925371|scaffold_200932.1
Length=373
Score = 291 bits (157), Expect = 1e-77
Identities = 198/218 (91%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 71 AAATCGAATCATGAAAAGATCTCACATTTCGTCTCCTCGTTCTTATTCACGACCAGCGAT 130
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 13 AAATCGAATCATGAAAAGATCTCACATTTCTTCTCCTCGTTCTTATTCTCGACCAGCGAT 72
Query 131 TTCAATCTTCGGTGTCTTCCTCTTGTTTCTTCTGGTTTTAACACTAAGCT-CTCGAAAAC 189
|||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 73 TTCAATCTTCAGTGTTTTCCTCTTGTTTCTTCTGGGTTTAACACTAA-CTTCTCGAAAAC 131
Query 190 CATCAGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTC 249
|||||||| |||||| | |||||||||||||||| |||||| ||| || ||||| |||||
Sbjct 132 CATCAGATCCATCCTTCTGTTTAGCTCCAAATCGGAACTTATCCAGAATATCGAAGATTC 191
Query 250 CGAGGTTTGCGTATTTGGTAACGGGAACGAAAGGAGAT 287
||| | | |||||||||||||||| ||||||||||||
Sbjct 192 CGAAGCTCACGTATTTGGTAACGGGGACGAAAGGAGAT 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5