BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37590.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934416 jgi|Araly1|934416|scaffold_402404.1 1561 0.0
> Ahg934416 jgi|Araly1|934416|scaffold_402404.1
Length=1022
Score = 1561 bits (845), Expect = 0.0
Identities = 974/1035 (94%), Gaps = 14/1035 (1%)
Strand=Plus/Plus
Query 151 TAAAATCAAAAGAGAATAACCATGGTTTTCTCCTCCATCCAAGCCTATCTTGATTCATCC 210
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TAAAATCAAAAGAGAATAACCATGGTTTTCTCCTCCATCCAAGCTTATCTTGATTCATCT 60
Query 211 AACTGGCAACAGGCTCCTCCGAGCAATTATAATCATGACGGAACAGGCGCCTCAGCAAA- 269
|||||||||||||||||||| |||||||||||||| ||||| ||| ||| ||| |||
Sbjct 61 AACTGGCAACAGGCTCCTCCAAGCAATTATAATCAGGACGGCGTAGGAGCCCCAG-AAAC 119
Query 270 TGGAGGTCATGTTCTTCGTCCTcagctgcagccacagcagcagccacagcagcagcCGCA 329
||||| |||||||||||||||||||| | |||| || || | ||||||||| |
Sbjct 120 CGGAGGCCATGTTCTTCGTCCTCAGCT---G---CAGC--CA--CA-A-CAGCAGCCGAA 167
Query 330 TCCTAATGGGAGCGGGGGCGGAGGTGGAGGTGGAGGCGGCTCGATCCGAGCAGGATCAAT 389
|||||||||||||| || ||||||||| | || || |||||||||||||||||||||||
Sbjct 168 TCCTAATGGGAGCGTAGGTGGAGGTGGAAGCGGCGGTGGCTCGATCCGAGCAGGATCAAT 227
Query 390 GGTGGACAGAGCAAGACAAGCAAACGTAGCCTTGCCAGAAGCAGCACTGAAATGTCCGAG 449
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 228 GGTGGACAGAGCAAGACAAGCAAACGTAGCCTTGCCTGAAGCAGCACTGAAATGTCCAAG 287
Query 450 ATGCGAATCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACTCAACCACG 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 288 ATGCGAATCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACTCAGCCACG 347
Query 510 CCACTTCTGCAAGACCTGCCGGAGATACTGGACACGTGGCGGAGCTCTCCGCAACGTCCC 569
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 348 CCACTTCTGCAAGACCTGCCGGAGATACTGGACACGTGGCGGTGCCCTCCGCAACGTCCC 407
Query 570 AGTCGGCGGTGGCTGCCGGAGAAACAGGCGTACCAAAAGCAACAGCAACAACAACAATAA 629
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 408 AGTCGGCGGTGGCTGCCGGAGAAACAGGCGTACTAAAAGCAGCAGCAACAACAACAATAA 467
Query 630 CAGCACTGCTACTAGCAATAACACCAGTTTCTCCTCCGGGAATGCATCCACCATCAGCAC 689
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 468 CAGCACTGCTACTAGCAACAACACCAGCTTCTCCTCCGGGAATGCATCCACCATCAGCTC 527
Query 690 GATTCTCTCCTCCCACTATGGAGGAAACCAAGAGAGTATCTTAAGCCAGATTTTGTCTCC 749
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GATTCTCTCCTCCCACTACGGAGGAAACCAAGAGAGTATCTTAAGCCAGATTTTGTCTCC 587
Query 750 GGCGAGGCTAATGAATCCTACTTACAATCATCTCGGAGATCTCACAAGTAATACAAAAAC 809
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 588 AGCGAGGCTAATGAATCCTACTTATAATCATCTCGGAGATCTCACAAATAATACAAAAAC 647
Query 810 AGACAACAACATGAGCTTGTTGAACTATGGAGGATTGAGTCAAGACTTGAGGTCAATCCA 869
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AGACAACAACATGAGTTTGTTGAACTATGGAGGATTGAGTCAAGACTTGAGGTCAATCCA 707
Query 870 CATGGGAGCTTCTGGTGGCTCGCTTATGAGCTGTGTTGATGAATGGAGATCGGCGTCTTA 929
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 708 CATGGGAGCTTCTGGTGGCTCGCTTATGAGCTGTGTTGATGAATGGAGATCAGCATCTCA 767
Query 930 TCATCAGCAGTCAAGTATGGGCGGTGGGAACTTGGAGGATTCTTCTAATCCTAATCCATC 989
|||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 TCATCAGCAGCCGAGTTTGGGCGGTGGAAACTTGGAGGATTCTTCTAATCCTAATCCATC 827
Query 990 CGCAAATGGGTTTTACTCTTTTGAGTCGCCGAGGATAACTTCAGCGTCAATCTCTTCTGC 1049
| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 828 CTCAAATGGGTTTTACCCTTTTGAGTCGCCGAGGATAACTTCAACTTCAATCTCTTCTGC 887
Query 1050 TTTAGCATCGCAGTTTTCTTCGGTTAAAGTTGAAGATAATCCTTACAAATGGGTTAATGT 1109
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TTTGGCATCGCAGTTTTCTTCGGTTAAAGTTGAAGATAATCCTTACAAATGGGTTAATGT 947
Query 1110 CAATGGTAATTGCTCTTCCTGGAATGATCTTTCTGCTTTCGGCTCTTCTCGTTGAGTTCA 1169
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 948 CAATGGTAATTGCTCTTCCTGGACTGATCTTTCTGCTTTCGGCTCTTCTCGTTGAGTTCA 1007
Query 1170 ACCACACAACAAAAA 1184
|||||||||||||||
Sbjct 1008 ACCACACAACAAAAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5