BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37600.1
Length=577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345495 jgi|Araly1|345495|fgenesh1_pg.C_scaffold_4001837 527 4e-149
Ahg321464 jgi|Araly1|321464|fgenesh1_pm.C_scaffold_4001521 527 4e-149
Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2 398 3e-110
Ahg349542 jgi|Araly1|349542|fgenesh1_pg.C_scaffold_6000135 233 9e-61
> Ahg345495 jgi|Araly1|345495|fgenesh1_pg.C_scaffold_4001837
Length=339
Score = 527 bits (285), Expect = 4e-149
Identities = 324/342 (95%), Gaps = 5/342 (1%)
Strand=Plus/Plus
Query 71 ATGACAACTCCAGCAGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGTC 130
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACAACTCCAGCGGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGTC 60
Query 131 ACCAGACGTGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACC 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCAGACGCGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACC 120
Query 191 ATATTCATAAGAAAAC-TGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGAAT 249
|||||||| || |||| |||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATATTCATCAG-AAACGTGATCAAGGAAGTAGCTGGATTGGCTCCTTATGAGAAGAGAAT 179
Query 250 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 239
Query 310 GGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGAT 369
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 240 GGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCTGGTGTTCTCCGCAAGAT 299
Query 370 GAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTA 411
|||||| |||||||| | ||||||||||||||||| |||
Sbjct 300 CAGGTCTGGTGGTGGTG--G-TGCTGCTGAGAAGAAGAAGTA 338
> Ahg321464 jgi|Araly1|321464|fgenesh1_pm.C_scaffold_4001521
Length=339
Score = 527 bits (285), Expect = 4e-149
Identities = 325/343 (95%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 71 ATGACAACTCCAGCAGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGTC 130
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACAACTCCAGCGGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGCCACGTCGTC 60
Query 131 ACCAGACGTGAGCTAGCTCCTCGTCCCAATTCTCGCAAAGGGAAAACGAGCAAGAGGACC 190
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ACCAGACGCGAGCTAGCTCCTCGTCCCAATTCTCGTAAAGGGAAAACGAGCAAGAGGACC 120
Query 191 ATATTCATAAGAAAAC-TGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGAAT 249
|||||||| || |||| |||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATATTCATCAG-AAACGTGATCAAGGAAGTAGCTGGATTGGCTCCTTATGAGAAGAGAAT 179
Query 250 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTT 239
Query 310 GGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAG-TGTTCTCCGCAAGA 368
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 240 GGGTACTCACAAGAGAGCTAAAAGGAAGAGAGAGGAGATGTCT-GCTGTTCTCCGCAAGA 298
Query 369 TGAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGTA 411
| |||||| |||||||||||||||||||||||||||| |||
Sbjct 299 TAAGGTCT---GGTGGTGCTGCTGCTGCTGAGAAGAAGAAGTA 338
> Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2
Length=615
Score = 398 bits (215), Expect = 3e-110
Identities = 311/356 (87%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 71 ATGACAACTCCAGC-AGTGAAGACCGGTTTGTTCGTTGGATTGAACAAAGGACACGTCGT 129
||| ||||||| || |||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 75 ATGCCAACTCC-GCAAGTGAAGACCGGTTTGTTCGTTGGGTTGAACAAAGGACATGTTGT 133
Query 130 CACCAGACGTGAGCTAGCTCCTCGTCC-CAATTCTCGCAAAGGGAAAACGAGCAAGAGGA 188
|||||||||||| |||||||||| || | |||||||||||| ||||||||||||||||
Sbjct 134 CACCAGACGTGAATTAGCTCCTCGACCTC-GTTCTCGCAAAGGAAAAACGAGCAAGAGGA 192
Query 189 CCATATTCATAAGAAAAC-TGATTAGGGAAGTAGCTGGAATGGCTCCTTATGAGAAGAGA 247
| || || || || |||| |||| | |||||| ||||| |||||||| ||||||||||||
Sbjct 193 CAATCTTTATCAG-AAACTTGATAAAGGAAGTTGCTGGTATGGCTCCCTATGAGAAGAGA 251
Query 248 ATCACTGAGCTTCTCAAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAG 307
|||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 252 ATCACTGAGCTTTTGAAGGTTGGTAAAGACAAACGTGCTCTTAAGGTTGCTAAGAGGAAG 311
Query 308 TTGGGTACTCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAG 367
||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 312 TTGGGAACCCACAAGAGAGCTAAGAGGAAGAGAGAGGAGATGTCCAGTACTCTCCGCAAA 371
Query 368 ATGAGGTCTCTTGGTGGTGCTGCTGCTGCTGAGAAGAAGATGT-AG-A-CATCTTA 420
||||||||| |||||||| | ||| |||||||||||| || || | |||||||
Sbjct 372 ATGAGGTCTGGTGGTGGTG--G-TGCAACTGAGAAGAAGAAGTGAGCATCATCTTA 424
> Ahg349542 jgi|Araly1|349542|fgenesh1_pg.C_scaffold_6000135
Length=327
Score = 233 bits (126), Expect = 9e-61
Identities = 263/326 (81%), Gaps = 21/326 (6%)
Strand=Plus/Plus
Query 91 GACCGGTTTGTTCGT-TGGATTGAACAAAGGACACGTCGTCACC-AGACGTGAGCTAGCT 148
||| || || ||||| ||| | |||||||||||||| || ||| || || |||| | ||
Sbjct 9 GACAGGCTTATTCGTGGGGA-TAAACAAAGGACACGTTGTTACCAAG-CGCGAGCAACCT 66
Query 149 CCTCGTCCC-AATTC-TC-GCAAAGGGAAAACGAGCAAGAGGAC-CATATTCATAAGAAA 204
||||| ||| || | | | ||||||||||| ||||| ||||| | | || || || |
Sbjct 67 CCTCG-CCCTAA--CAACAGAAAAGGGAAAACAAGCAAAAGGACTC-TTTTTATCAGGAG 122
Query 205 ACTGATTAGGGAAGTAGCTGG--AATGGCTCCTTATGAGAAGAGAATCACTGAGCTTCTC 262
|| || | |||||| || || || ||||| ||||||||||| |||||||||||| |
Sbjct 123 TCTCATCAAGGAAGTTGCGGGTCAA--GCTCCCTATGAGAAGAGGATCACTGAGCTTTTG 180
Query 263 AAGGTTGGGAAAGACAAGCGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGTACTCACAAG 322
||||| || ||||||||| | |||||||| ||||| ||||| |||||||| |||||||||
Sbjct 181 AAGGTCGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGAGAAAGTTGGGAACTCACAAG 240
Query 323 AGAGCTAAGAGGAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTCTTGGT 382
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 AGAGCTAAGCGAAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTGGTGGT 300
Query 383 GGTGCTGC-TGCTGCTGAGAAGAAGA 407
|||| ||| | | | ||||||||||
Sbjct 301 GGTGGTGCAT-C--C-GAGAAGAAGA 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21100040717
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5