BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37610.1
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345496 jgi|Araly1|345496|fgenesh1_pg.C_scaffold_4001838 599 6e-171
Ahg345502 jgi|Araly1|345502|fgenesh1_pg.C_scaffold_4001844 593 3e-169
> Ahg345496 jgi|Araly1|345496|fgenesh1_pg.C_scaffold_4001838
Length=486
Score = 599 bits (324), Expect = 6e-171
Identities = 445/499 (89%), Gaps = 26/499 (5%)
Strand=Plus/Plus
Query 1 ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA 60
Query 61 AGGCATCGGCGATATTTTGATTACTTTATCGACGAGATATTATGGTTATCATTTTTAGGT 120
|||||||||||||||||||||| ||||||| |||||| |||| |||| | | ||
Sbjct 61 AGGCATCGGCGATATTTTGATTGCTTTATCAACGAGAAATTA---TTAT-A----T-CGT 111
Query 121 ATGTCGGAGACGAGCTTGAAAGAGGAAGAGGTAACGTTAGGTGGTGTTAAAGAGACGAGA 180
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 112 ATGTCGGAGACGAGCTTGAAAGAGGATGAGGTAACGTTAGGTGGGGTTAAAGAGACGATA 171
Query 181 GAAGAAGAATGTTCCGACGATAAACTTGTGTTGGATATTTGTCTgaaaaggaagagatta 240
|||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| |
Sbjct 172 GAAGAAGAATGTTCAGACAATAAACTTGTGTTGGAAATTTGTCGGAAAAGGAAGAGATCA 231
Query 241 gatgaagaagaagaagaagaagttgtggaggaagagaaTGATGGGTTCAAGACACCGACT 300
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 232 GATGAAGAAGAAGAAGAAG---TTGTGGAGGAAGAGAATGATGGATTCAAGACACCGACT 288
Query 301 CGTCCGGAGAATAGAATCCCTATAGTT-AGAGAATGTCCACCGGCGCCGATGAAACG--- 356
||||| |||||||||||||||| || | | |||||||||||||||||||| |||| |
Sbjct 289 CGTCCAGAGAATAGAATCCCTA-AGGTCACAGAATGTCCACCGGCGCCGAGGAAAGGGGA 347
Query 357 -T-TC-------GTCGGAGATGTTTAGAGGTAGAACAATGTATTGCCGGAGACGGTTGAG 407
| | ||||| |||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 348 ATATTTATATTTGTCGGGGATGCTTAGAGGTAAAACAATGTACTGCCGGAGACGGTTGAG 407
Query 408 TTTCTTGCCGGAAGATGACGTCAACTCGTTTATAACGGATTTGCAGTGGAGGACGACAAC 467
||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||| ||
Sbjct 408 TTTCTCGCCGGAAGATGACGTGAGCTCGTTTATAACAGATTTGCAGTGGAGGACGACGAC 467
Query 468 AATGACGATCAAGAAATAA 486
|||||||||||||||||||
Sbjct 468 AATGACGATCAAGAAATAA 486
> Ahg345502 jgi|Araly1|345502|fgenesh1_pg.C_scaffold_4001844
Length=486
Score = 593 bits (321), Expect = 3e-169
Identities = 444/499 (89%), Gaps = 26/499 (5%)
Strand=Plus/Plus
Query 1 ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATTGGAAACGTAAAGGCAGATGTCAATTTGGTGCTTAACTTGCGAGAAGCAGAA 60
Query 61 AGGCATCGGCGATATTTTGATTACTTTATCGACGAGATATTATGGTTATCATTTTTAGGT 120
|||||||||||||||||||||| ||||||| |||||| |||| |||| | | ||
Sbjct 61 AGGCATCGGCGATATTTTGATTGCTTTATCAACGAGAAATTA---TTAT-A----T-CGT 111
Query 121 ATGTCGGAGACGAGCTTGAAAGAGGAAGAGGTAACGTTAGGTGGTGTTAAAGAGACGAGA 180
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 112 ATGTCGGAGACGAGCTTGAAAGAGGATGAGGTAACGTTAGGTGGGGTTAAAGAGACGATA 171
Query 181 GAAGAAGAATGTTCCGACGATAAACTTGTGTTGGATATTTGTCTgaaaaggaagagatta 240
|||||||||||||| ||| |||||| ||||||||| ||||||| |||||||||||||| |
Sbjct 172 GAAGAAGAATGTTCAGACAATAAACATGTGTTGGAAATTTGTCGGAAAAGGAAGAGATCA 231
Query 241 gatgaagaagaagaagaagaagttgtggaggaagagaaTGATGGGTTCAAGACACCGACT 300
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 232 GATGAAGAAGAAGAAGAAG---TTGTGGAGGAAGAGAATGATGGATTCAAGACACCGACT 288
Query 301 CGTCCGGAGAATAGAATCCCTATAGTT-AGAGAATGTCCACCGGCGCCGATGAAACG--- 356
||||| |||||||||||||||| || | | |||||||||||||||||||| |||| |
Sbjct 289 CGTCCCGAGAATAGAATCCCTA-AGGTCACAGAATGTCCACCGGCGCCGAGGAAAGGGGA 347
Query 357 -T-TC-------GTCGGAGATGTTTAGAGGTAGAACAATGTATTGCCGGAGACGGTTGAG 407
| | ||||| |||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 348 ATATTTATATTTGTCGGGGATGCTTAGAGGTAAAACAATGTACTGCCGGAGACGGTTGAG 407
Query 408 TTTCTTGCCGGAAGATGACGTCAACTCGTTTATAACGGATTTGCAGTGGAGGACGACAAC 467
||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||| ||
Sbjct 408 TTTCTCGCCGGAAGATGACGTGAGCTCGTTTATAACGGATTTGCGGTGGAGGACGACGAC 467
Query 468 AATGACGATCAAGAAATAA 486
|||||||||||||||||||
Sbjct 468 AATGACGATCAAGAAATAA 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17627882118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5