BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37630.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934420 jgi|Araly1|934420|scaffold_402408.1 2074 0.0
Ahg321463 jgi|Araly1|321463|fgenesh1_pm.C_scaffold_4001520 1853 0.0
> Ahg934420 jgi|Araly1|934420|scaffold_402408.1
Length=1257
Score = 2074 bits (1123), Expect = 0.0
Identities = 1214/1258 (97%), Gaps = 5/1258 (0%)
Strand=Plus/Plus
Query 76 aaaGTGAGAGAGAGAGCAAATCTGTGTGATGGAAGTTGCTCTTGAGTTTGGGATTATTTA 135
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAGTGATAGAGAGAGCAAATCTGTGTGATGGAAGTTGCTCTTGAGTTTGGGATTA-TTA 59
Query 136 T-CTTTTCAATATCATTTGATGAAGAAGGATGGTGAGATGGGAAGAAGTGATGTCAGGAG 194
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 TCCTTTTCAATATCATTTGATGAAGAAGGATGGTGAGTTGGGAAGAAGTGATGTCAGGAG 119
Query 195 GAGTAGGAGATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCT 254
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGCAGGAGATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCG 179
Query 255 TACGTTAGACAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCT 314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 TACGTTAGACAGTTCGGTCCGAGAGAATGGCATCTTGTATCTGAGCGTATGAACAAACCT 239
Query 315 TTGAACCGTGACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAGCCAGGGATC 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 TTGAACCGTGACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAACCAGGGATC 299
Query 375 AAGAAAGGGTCTTTGACAGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACAC 434
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGAAAGGTTCTTTGACTGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACAC 359
Query 435 GGCAACAAGTGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCAAAGCGGTTAGGG 494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GGCAACAAGTGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCCAAGCGGTTAGGG 419
Query 495 AAGTGGTGGGAAGTGTTTAAGgagaagcaacagagagaagagaaagagagtaacaagaga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTGGTGGGAAGTGTTTAAGGAGAAGCAACAGAGAGAAGAGAAAGAGAGTAACAAGAGA 479
Query 555 gTTGAGCCTATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTCGCTGAGAAGCTT 614
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTTGAGCCTATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTTGCTGAGAAGCTT 539
Query 615 GTCAAAGAGCGGTCTAACGTTGT-CC--CTGCTGCTGCCGCTGCTGCAACGGTTGTGATG 671
||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct 540 GTCAAAGAGCGGTCTAACGTTGTTCCTGCTGCTGCTGCCACTGCTGCCACGGTTGTGATG 599
Query 672 GCTAATTCGAATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCAGTG 731
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 600 GCTAATTCGAATGGAGGGTTTTTACATTCTGAACAGCAAGTTCAGCCTCCTAACCCGGTG 659
Query 732 ATCCCGCCTTGGTTAGCTACTTCTAACAATGGGAACAATGTTGTTGCAAGGCCTCCCTCG 791
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 660 ATCCCGCCTTGGTTAGCTACTTCTAATAATGGGAACAATGTTGTTGCCAGGCCTCCCTCG 719
Query 792 GTAACTTTGACATTATCGCCTTCCACAGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCG 851
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 720 GTGACTTTAACATTATCGCCCTCCACCGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCG 779
Query 852 TGGCTGCAGCAGCAACAGCCTGAGAGAGCAGAGAACGGTCCAGGGGGACTTGTGTTAGGG 911
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 780 TGGCTGCAGCAGCAACAGCCCGAGAGAGCAGAGAGCGGTCCTGGGGGACTTGTGTTAGGG 839
Query 912 AGTATGATGCCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAGCTTGTGGAG 971
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 840 AGTATGATGCCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAACTAGTGGAA 899
Query 972 TGTTGTAGAGAGTTGGAGGAAGGGCACCGAGCTTGGGCAGACCATAAGAAAGAGGCTGCA 1031
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 900 TGTTGTAGAGAGTTGGAGGAAGGGCATAGAGCTTGGGCGGACCATAAGAAAGAGGCTGCA 959
Query 1032 TGGAGGCTAAGAAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAG 1091
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGGAGGTTAAGGAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAG 1019
Query 1092 AAGATGGAGGAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAGAAGAACGCAATG 1151
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1020 AAGATGGAGGAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAAAAGACCGCAATG 1079
Query 1152 GAGAAGATCGAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCAGAGGCC 1211
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GAGAAAATCGAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCTGAGGCC 1139
Query 1212 AAAGACCAGAAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTTCTT 1271
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 AAAGACCAGAAACTGGCTGATCAATGGACCTCTAAGCATATCAGACTCACCAAGTTTCTT 1199
Query 1272 GAACAACAAATGGGTTGCAGATTAGACCGCCCCTGAACCGTCTCCTAAACTCTTTGTT 1329
|||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1200 GAACAACACATGGGTTGCAGATTAGACCGCCCCTAAACCGTCTCCTAAGCTCTTTGTT 1257
> Ahg321463 jgi|Araly1|321463|fgenesh1_pm.C_scaffold_4001520
Length=1107
Score = 1853 bits (1003), Expect = 0.0
Identities = 1073/1107 (97%), Gaps = 3/1107 (0%)
Strand=Plus/Plus
Query 204 ATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCTTACGTTAGA 263
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCGTACGTTAGA 60
Query 264 CAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCTTTGAACCGT 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCTTTGAACCGT 120
Query 324 GACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAGCCAGGGATCAAGAAAGGG 383
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 GACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAACCAGGGATCAAGAAAGGT 180
Query 384 TCTTTGACAGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACACGGCAACAAG 443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTTGACTGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACACGGCAACAAG 240
Query 444 TGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCAAAGCGGTTAGGGAAGTGGTGG 503
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCCAAGCGGTTAGGGAAGTGGTGG 300
Query 504 GAAGTGTTTAAGgagaagcaacagagagaagagaaagagagtaacaagagagTTGAGCCT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTGTTTAAGGAGAAGCAACAGAGAGAAGAGAAAGAGAGTAACAAGAGAGTTGAGCCT 360
Query 564 ATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTCGCTGAGAAGCTTGTCAAAGAG 623
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTTGCTGAGAAGCTTGTCAAAGAG 420
Query 624 CGGTCTAACGTTGT-CC--CTGCTGCTGCCGCTGCTGCAACGGTTGTGATGGCTAATTCG 680
|||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CGGTCTAACGTTGTTCCTGCTGCTGCTGCCGCTGCTGCCACGGTTGTGATGGCTAATTCG 480
Query 681 AATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCAGTGATCCCGCCT 740
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCGGTGATCCCGCCT 540
Query 741 TGGTTAGCTACTTCTAACAATGGGAACAATGTTGTTGCAAGGCCTCCCTCGGTAACTTTG 800
||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 541 TGGTTAGCTACTTCTAATAATGGGAACAATGTTGTTGCCAGGCCTCCCTCGGTGACTTTA 600
Query 801 ACATTATCGCCTTCCACAGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCGTGGCTGCAG 860
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACATTATCGCCCTCCACCGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCGTGGCTGCAG 660
Query 861 CAGCAACAGCCTGAGAGAGCAGAGAACGGTCCAGGGGGACTTGTGTTAGGGAGTATGATG 920
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 661 CAGCAACAGCCCGAGAGAGCAGAGAGCGGTCCTGGGGGACTTGTGTTAGGGAGTATGATG 720
Query 921 CCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAGCTTGTGGAGTGTTGTAGA 980
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 721 CCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAACTAGTGGAATGTTGTAGA 780
Query 981 GAGTTGGAGGAAGGGCACCGAGCTTGGGCAGACCATAAGAAAGAGGCTGCATGGAGGCTA 1040
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 GAGTTGGAGGAAGGGCATAGAGCTTGGGCGGACCATAAGAAAGAGGCTGCATGGAGGCTA 840
Query 1041 AGAAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAGAAGATGGAG 1100
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGGAGACTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAGAAGATGGAG 900
Query 1101 GAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAGAAGAACGCAATGGAGAAGATC 1160
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 901 GAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAAAAGAGCGCAATGGAGAAGATT 960
Query 1161 GAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCAGAGGCCAAAGACCAG 1220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 GAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCCGAGGCCAAAGACCAG 1020
Query 1221 AAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTTCTTGAACAACAA 1280
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 AAACTGGCTGATCAATGGACCTCTAAGCATATCAGACTCACCAAGTTTCTTGAACAACAC 1080
Query 1281 ATGGGTTGCAGATTAGACCGCCCCTGA 1307
|||||||||||||||||||||||||||
Sbjct 1081 ATGGGTTGCAGATTAGACCGCCCCTGA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5