BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37640.1 Length=1202 Score E Sequences producing significant alignments: (Bits) Value Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1 1742 0.0 Ahg934422 jgi|Araly1|934422|scaffold_402410.1 1314 0.0 > Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1 Length=1183 Score = 1742 bits (943), Expect = 0.0 Identities = 1116/1197 (93%), Gaps = 22/1197 (2%) Strand=Plus/Plus Query 4 CCTATCCAATACACAtctctctctctctTAT-TAACTCAATGACGGCGACTGCGTTTAGG 62 ||||||||||||||||||||||||||| | | | |||||||||||||||||||||| || Sbjct 1 CCTATCCAATACACATCTCTCTCTCTC-TCTCTCTCTCAATGACGGCGACTGCGTTT-GG 58 Query 63 -GTCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAAT 121 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 59 AATCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAAT 118 Query 122 CCCCGGCGTTTACAGTGGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAG 181 ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 119 CCCCGGCGTTTACAGCGGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAG 178 Query 182 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 238 Query 242 CGGTGTGAACACGGCGGCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGC 301 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 239 CGGTGTGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGC 298 Query 302 TTGTTTTGAGATTAAGTGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTAT 361 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 299 TTGTTTTGAGATTAAGTGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTAT 358 Query 362 TCTTGTGACGGCGACGAACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGG 421 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 359 TCTTGTGACGGCGACAAACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGG 418 Query 422 GTGGTGCAATCCGCCGCGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 481 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 478 Query 482 TCTATACCGTGCAGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 541 | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 538 Query 542 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 598 Query 602 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 658 Query 662 GATGAGTCGGAACTGGGGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACT 721 ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 659 GATGAGTAGGAACTGGGGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACT 718 Query 722 CTCTTTCCGAGTCACCGCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGC 781 |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| | Sbjct 719 CTCTTTCCGAGTCACCGCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTC 778 Query 782 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAA 841 ||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| Sbjct 779 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA- 837 Query 842 CCACCCAAAAGA-TGtt-ttttaattttattttttACAATGGAAGAAGACACAAACAAGA 899 | |||||| ||| |||| |||| ||||||||||| | | ||| || |||| |||||||| Sbjct 838 C-ACCCAACAGAATGTTATTTTTATTTTATTTTTAATA-TGG--GA-GACAGAAACAAGA 892 Query 900 AGAGAGATGAGACATTTTCCAGCCCTGGGTTTTCCCTTTAATTTTCTTGGGAATATTCCG 959 ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 893 AGAGAGATGGGACATTTTCCAGCCCTGGGTTTTCTCTTTAATTTTCTTGGGAAAATTCCG 952 Query 960 GTGGCTTGTGGAAAATATTTCCGTTTTTAGTATTATTATCAGCAAAATTTCTTTT-AATC 1018 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 953 GTGGCTTGTGGAAAATATTTCCTTTTTTAGTATTATTATCAGCAAAATTTCTTTTTAATG 1012 Query 1019 TTTGCGATTTACGAGTGATTTGTTTTTCTCTTGGTTATTTTGTTCCTTTAATTATTTCGT 1078 ||||||||||| ||||||||||||||||| |||||||| || | |||| | ||| ||||| Sbjct 1013 TTTGCGATTTAAGAGTGATTTGTTTTTCTTTTGGTTATGTT-TCCCTT-AGTTACTTCGT 1070 Query 1079 TGGTGGCATCTTCGTTCTGCTAATAAGCCAAAGAGTGTCGAACAGTC--AGTGATCGAGT 1136 ||||||||||||| |||||| |||||||||||||||| || ||||| | ||||||||| Sbjct 1071 TGGTGGCATCTTCTTTCTGCAAATAAGCCAAAGAGTGGGGATCAGTCTTA-TGATCGAGT 1129 Query 1137 CGAATGGACCGTGTAATGGGCCATTGGGCCAAGTTTTCTTGATATAAAATCTGAAAT 1193 || |||||||||||||| |||||||||||||| | | | |||||||||||||||| Sbjct 1130 CGGATGGACCGTGTAATAGGCCATTGGGCCAA-TATA-T--ATATAAAATCTGAAAT 1182 > Ahg934422 jgi|Araly1|934422|scaffold_402410.1 Length=829 Score = 1314 bits (711), Expect = 0.0 Identities = 793/832 (95%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 20 ctctctctctct-TATTAACTCAATGACGGCGACTGCGTTTAGGG-TCGGCTTGTGGTTG 77 |||||||||||| | || | | ||||||||||||||||||| ||| |||||||||||||| Sbjct 1 CTCTCTCTCTCTCT-TTCA-T-AATGACGGCGACTGCGTTT-GGGATCGGCTTGTGGTTG 56 Query 78 GCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAATCCCCGGCGTTTACAGT 137 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 57 GCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAATCCCCGGCGTTTACAGC 116 Query 138 GGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAGTGACGCCTCCGGCACA 197 ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 117 GGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAGTGACGCCTCCGGCACA 176 Query 198 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 236 Query 258 GCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGCTTGTTTTGAGATTAAG 317 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 237 GCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGCTTGTTTTGAGATTAAG 296 Query 318 TGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTATTCTTGTGACGGCGACG 377 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 297 TGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTATTCTTGTGACGGCGACA 356 Query 378 AACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGGGTGGTGCAATCCGCCG 437 ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 357 AACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGGATGGTGTAATCCGCCG 416 Query 438 CGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTCTATACCGTGCAGGC 497 || |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 417 CGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTTTGTACCGTGCCGGC 476 Query 498 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 536 Query 558 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 596 Query 618 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTCGGAACTGG 677 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 597 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTAGGAACTGG 656 Query 678 GGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 737 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 657 GGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 716 Query 738 GCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGCCACGTGGCAGTTTGGT 797 |||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||| Sbjct 717 GCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTCCACGTGGCAGTTTGGT 776 Query 798 CAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAACCACCCAA 849 ||||||||||||||||||||||| |||||||||| || ||||| | |||||| Sbjct 777 CAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA-C-ACCCAA 826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44870673309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5