BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37640.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1 1742 0.0
Ahg934422 jgi|Araly1|934422|scaffold_402410.1 1314 0.0
> Ahg482761 jgi|Araly1|482761|fgenesh2_kg.4__1821__AT2G37640.1
Length=1183
Score = 1742 bits (943), Expect = 0.0
Identities = 1116/1197 (93%), Gaps = 22/1197 (2%)
Strand=Plus/Plus
Query 4 CCTATCCAATACACAtctctctctctctTAT-TAACTCAATGACGGCGACTGCGTTTAGG 62
||||||||||||||||||||||||||| | | | |||||||||||||||||||||| ||
Sbjct 1 CCTATCCAATACACATCTCTCTCTCTC-TCTCTCTCTCAATGACGGCGACTGCGTTT-GG 58
Query 63 -GTCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAAT 121
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 59 AATCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAAT 118
Query 122 CCCCGGCGTTTACAGTGGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAG 181
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 119 CCCCGGCGTTTACAGCGGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAG 178
Query 182 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATA 238
Query 242 CGGTGTGAACACGGCGGCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGC 301
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 239 CGGTGTGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGC 298
Query 302 TTGTTTTGAGATTAAGTGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTAT 361
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 299 TTGTTTTGAGATTAAGTGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTAT 358
Query 362 TCTTGTGACGGCGACGAACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGG 421
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 359 TCTTGTGACGGCGACAAACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGG 418
Query 422 GTGGTGCAATCCGCCGCGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 481
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGG 478
Query 482 TCTATACCGTGCAGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 541
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGG 538
Query 542 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGT 598
Query 602 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAG 658
Query 662 GATGAGTCGGAACTGGGGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACT 721
||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 659 GATGAGTAGGAACTGGGGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACT 718
Query 722 CTCTTTCCGAGTCACCGCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGC 781
|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |
Sbjct 719 CTCTTTCCGAGTCACCGCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTC 778
Query 782 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAA 841
||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 779 CACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA- 837
Query 842 CCACCCAAAAGA-TGtt-ttttaattttattttttACAATGGAAGAAGACACAAACAAGA 899
| |||||| ||| |||| |||| ||||||||||| | | ||| || |||| ||||||||
Sbjct 838 C-ACCCAACAGAATGTTATTTTTATTTTATTTTTAATA-TGG--GA-GACAGAAACAAGA 892
Query 900 AGAGAGATGAGACATTTTCCAGCCCTGGGTTTTCCCTTTAATTTTCTTGGGAATATTCCG 959
||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 893 AGAGAGATGGGACATTTTCCAGCCCTGGGTTTTCTCTTTAATTTTCTTGGGAAAATTCCG 952
Query 960 GTGGCTTGTGGAAAATATTTCCGTTTTTAGTATTATTATCAGCAAAATTTCTTTT-AATC 1018
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 953 GTGGCTTGTGGAAAATATTTCCTTTTTTAGTATTATTATCAGCAAAATTTCTTTTTAATG 1012
Query 1019 TTTGCGATTTACGAGTGATTTGTTTTTCTCTTGGTTATTTTGTTCCTTTAATTATTTCGT 1078
||||||||||| ||||||||||||||||| |||||||| || | |||| | ||| |||||
Sbjct 1013 TTTGCGATTTAAGAGTGATTTGTTTTTCTTTTGGTTATGTT-TCCCTT-AGTTACTTCGT 1070
Query 1079 TGGTGGCATCTTCGTTCTGCTAATAAGCCAAAGAGTGTCGAACAGTC--AGTGATCGAGT 1136
||||||||||||| |||||| |||||||||||||||| || ||||| | |||||||||
Sbjct 1071 TGGTGGCATCTTCTTTCTGCAAATAAGCCAAAGAGTGGGGATCAGTCTTA-TGATCGAGT 1129
Query 1137 CGAATGGACCGTGTAATGGGCCATTGGGCCAAGTTTTCTTGATATAAAATCTGAAAT 1193
|| |||||||||||||| |||||||||||||| | | | ||||||||||||||||
Sbjct 1130 CGGATGGACCGTGTAATAGGCCATTGGGCCAA-TATA-T--ATATAAAATCTGAAAT 1182
> Ahg934422 jgi|Araly1|934422|scaffold_402410.1
Length=829
Score = 1314 bits (711), Expect = 0.0
Identities = 793/832 (95%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 20 ctctctctctct-TATTAACTCAATGACGGCGACTGCGTTTAGGG-TCGGCTTGTGGTTG 77
|||||||||||| | || | | ||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 CTCTCTCTCTCTCT-TTCA-T-AATGACGGCGACTGCGTTT-GGGATCGGCTTGTGGTTG 56
Query 78 GCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAATCCCCGGCGTTTACAGT 137
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 57 GCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAATCCCCGGCGTTTACAGC 116
Query 138 GGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAGTGACGCCTCCGGCACA 197
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 GGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAGTGACGCCTCCGGCACA 176
Query 198 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 236
Query 258 GCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGCTTGTTTTGAGATTAAG 317
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 GCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGCTTGTTTTGAGATTAAG 296
Query 318 TGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTATTCTTGTGACGGCGACG 377
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTATTCTTGTGACGGCGACA 356
Query 378 AACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGGGTGGTGCAATCCGCCG 437
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 357 AACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGGATGGTGTAATCCGCCG 416
Query 438 CGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTCTATACCGTGCAGGC 497
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 417 CGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTTTGTACCGTGCCGGC 476
Query 498 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 536
Query 558 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 596
Query 618 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTCGGAACTGG 677
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTAGGAACTGG 656
Query 678 GGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 737
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 657 GGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 716
Query 738 GCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGCCACGTGGCAGTTTGGT 797
|||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 717 GCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTCCACGTGGCAGTTTGGT 776
Query 798 CAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAACCACCCAA 849
||||||||||||||||||||||| |||||||||| || ||||| | ||||||
Sbjct 777 CAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA-C-ACCCAA 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5