BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37660.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934425 jgi|Araly1|934425|scaffold_402413.1 1142 0.0
> Ahg934425 jgi|Araly1|934425|scaffold_402413.1
Length=751
Score = 1142 bits (618), Expect = 0.0
Identities = 694/731 (95%), Gaps = 3/731 (0%)
Strand=Plus/Plus
Query 63 GAGCTATCAAACTCCAGTCAATGGCGATGATGACGACGACGACGACAACATTCTTCCATC 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GAGCTATCAAACTCCAGTCAATGGCGATGAT---GACGACGACGACAACATTCTTCCATC 57
Query 123 CACTACTTCCTGCTAACACTTACAAATCCGGAGCTGTAGCTTCTTCCTTTGTCTCAGTTC 182
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||
Sbjct 58 CACTACTTCCTGCTAACACGTGCAAATCCGGAGCTGTATCTTCTTCCTTTGTCTCAGTTC 117
Query 183 CTCGTTCGTCGTCTCTCCAATTTCGCTCACTTGTGTCAGATTCTACGTCGATTTGTGGTC 242
||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 118 CTCGTTCTTCGTCTCTTCAATTCCGCTCACTTGTTTCGGATTCTACGTCGATTTGTGGTC 177
Query 243 CAAGTAAGTTCACCGGAAAAAACAGAAGAGTATCGGTTACCGTTTCCGCCGCCGCAACAA 302
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACGTAAGTTCACCGGGAAAAACAGAAGAGTATCGGTTACCGTTTCCGCCGCCGCAACAA 237
Query 303 CTGAACCTCTCACCGTCCTCGTTACCGGTGCCGGTGGAAGAACAGGACAAATTGTGTATA 362
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 ATGAACCTCTCACCGTTCTCGTTACCGGAGCCGGTGGAAGAACAGGACAAATTGTGTATA 297
Query 363 AGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAGGGGTTTAGTGAGGACAAAGGAGA 422
||||||||||||||||||| || ||||| || || || ||||||||||||||||||||||
Sbjct 298 AGAAATTGAAGGAGAGGTCTGATCAGTTTGTTGCGAGAGGTTTAGTGAGGACAAAGGAGA 357
Query 423 GTAAGGAGAAGATCAATGGAGAGGATGAAGTATTCATTGGAGATATTAGAGATACTGCAT 482
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct 358 GTAAGGAGAAGATCAATGGAGAAGATGAAGTATTCATTGGAGATATCAGAGATCCTGCAG 417
Query 483 CAATTGCTCCTGCTGTTGAAGGGATTGATGCTTTGGTCATTCTTACTAGCGCTGTTCCGC 542
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 CCATTGCTCCTGCTGTTGAAGGGATTGATGCTTTGGTCATTCTTACGAGCGCTGTTCCGC 477
Query 543 AGATGAAGCCCGGTTTTGATCCTAGTAAAGGAGGAAGACCTGAGTTCTTCTTTGATGATG 602
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 478 AGATGAAACCCGGTTTTGATCCTAGTAAAGGAGGAAGGCCTGAGTTCTTCTTTGAAGATG 537
Query 603 GAGCTTATCCAGAACAGGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGCTAAGG 662
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGCTTATCCAGAACAGGTTGATTGGATTGGTCAGAAGAATCAGATAGACGCTGCTAAGG 597
Query 663 CTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACC 722
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGCAGGAGTTAAGCAGATTGTGTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACC 657
Query 723 CTCTCAATAGTATTGGCAATGCTAACATTCTGGTCTGGAAGAGAAAGGCTGAGCAATACT 782
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 658 CTCTCAATAGTATTGGCAATGCCAACATTCTGGTTTGGAAGAGAAAGGCTGAGCAATACT 717
Query 783 TGGCTGATTCC 793
|||||||||||
Sbjct 718 TGGCTGATTCC 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5