BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37678.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482767 jgi|Araly1|482767|fgenesh2_kg.4__1827__AT2G37678.1 1188 0.0
> Ahg482767 jgi|Araly1|482767|fgenesh2_kg.4__1827__AT2G37678.1
Length=867
Score = 1188 bits (643), Expect = 0.0
Identities = 816/892 (91%), Gaps = 41/892 (5%)
Strand=Plus/Plus
Query 2 GACCCTCTGAAAGTGGAAAGAGCATTTTTTAAAAGAGTAATAAGAAAAACAATTATCTTT 61
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GACCCTCTGAAAGTGGAAAGAGCATTTTTT-AAAGAGTAATAAGAAAAACAATTATCTTT 59
Query 62 GAActctctctatctctctctctctctctGCGATCTATGCCTGAAGTGGAAGTGGATAAC 121
| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 G-A--------A-CTCTCTCTCTCTCTCTGCGATCTATGCCTGAAGTGGAAGTGGATAAC 109
Query 122 AACAACGAGAAGCCATCTGAGATTAACAGT----T--T-CCA---T-CA-CATGATCATA 169
|||||||||||||||||||||||||||||| | | || | || ||||||||||
Sbjct 110 AACAACGAGAAGCCATCTGAGATTAACAGTAACATACTAACATTTTCCATCATGATCATA 169
Query 170 AGTAGTAGTAAAAATGTGTTGAAAAT-G--GAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 226
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 170 AGTAGTAGTAAAAATGTGTTGAAAATGGAAGAAGAAGTTGAGGTGAGCAAGAAGAGGAAA 229
Query 227 TTTCAGACAGATCAATCTGATGAGTTATCGTTATTACCTCTGTCAAAACACACTTGTTTT 286
||||||||||||||||||||||||||||| ||| ||||||| || || ||| |||||||
Sbjct 230 TTTCAGACAGATCAATCTGATGAGTTATCATTACTACCTCTTTCCAAGCACGCTTGTTTC 289
Query 287 GCCAATGTTGCTTGTTCAGAGAATACAAATGGTAACTCGGAGATTGATACAGAGTATTCA 346
||||||||||||||||| || ||||| |||| || |||||||||||||||||||||||||
Sbjct 290 GCCAATGTTGCTTGTTCTGACAATACCAATGTTAGCTCGGAGATTGATACAGAGTATTCA 349
Query 347 ATGTCTTCTTATGTGAACTCAACAACTTCTATGGAGTGTAACAATGATATAGAGATGAAA 406
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 350 ATGTCTT---ATGTGAACTCAACAACTTCTATGGAATGTAACAATGATATTGAGATGAAA 406
Query 407 GAGGAATCATCTGGATCATGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GAGGAATCATCTGGATCGTGCGGTGAAGACAAGATGATCTCTTTCGAAAGCCATCTAGAT 466
Query 467 TACATCTATGGGACTCAGAA-CTTAGAGGATTTTTCAGAGAAAGTCATTGAAAACATTCT 525
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 467 TACATCTATGGGACTCAGAATCTG-GAGGATTTTTCAGATAAAGTCATTGAAAACATTCT 525
Query 526 CTATCTCGATGAACAAGAAGAAGAAGAGGAAGATGCTAAAGGATGTAGTAGTAATGCTGC 585
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 526 CTATCTCGATGAACAAGAAGAAGAAGAAGAAG---CTAAAGGATTTAGTAGTAATGCTGC 582
Query 586 TAAGTTTGTTCTGTCCTCTGGAAGATGGACTGTTAACCAAGATGATTCTACTCTACATGA 645
||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 583 TAAGTTTGTTCTGTCCTCTGGGAGATGGACTGTTAACCAAGATTCTTCTACTATACATGA 642
Query 646 GACAAAGAAGCCTACCATTGATCAAGAATTTGAACAATACTTCTCAACGCTAATGCTGTA 705
| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 643 GCCAAAGAAGCCAACCATTGATCAAGAATTTGAACAATACTTCTCAACACTAATGCTGTG 702
Query 706 ACAAAATGATGTTGAGACTCAAAACATATATGAAGAGATGTATGTACATAGAACTGTACT 765
||| ||||||||| |||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 703 ACATAATGATGTTAAGACTCAAAACATATATGAAGA--T--ATGTACATAGAGCTGTACT 758
Query 766 CGTTCTGTTTTGATTCTTGTCAACCTTaaaaaaaCGTTCAATTCAAAGTGATTAGAGAGC 825
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 759 CATTCTGTTTTGATTCTTGTCAACCTTAAAA---CGTTCAATTCAAAGTGATTAGAGAGC 815
Query 826 TTCTTTGAAATGTTTGCAACTCTAGTCTTCAACTTTTAAGATTTTTATTAGC 877
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 816 TTCTTTGAAATGTTTGTAACTCTAGTCTTCAACTTTCAAGATTTTGATTAGC 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5