BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37680.1 Length=963 Score E Sequences producing significant alignments: (Bits) Value Ahg482768 jgi|Araly1|482768|fgenesh2_kg.4__1828__AT2G37680.1 1271 0.0 > Ahg482768 jgi|Araly1|482768|fgenesh2_kg.4__1828__AT2G37680.1 Length=802 Score = 1271 bits (688), Expect = 0.0 Identities = 747/775 (96%), Gaps = 5/775 (1%) Strand=Plus/Plus Query 51 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 90 Query 111 ATCCTGGGAATCGATCACCACTTCCCCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 170 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 91 ATCCTGGGAATCGATCACCACTTCCGCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 150 Query 171 CTGGTACGCAAAATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGA 230 |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 151 CTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAACGTCCAGA 210 Query 231 TACAGGGTATTGACCTTGAACATGGTTATCTTTGTGGCACCATGGAAGCTCTAAACGTTC 290 ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 211 TACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTAAACGTTC 270 Query 291 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 330 Query 351 ATACCTTTTACACCGGAAAATGGGAAGCAACGAGGGAAGATGATATGAGACATTGGTCAA 410 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 331 ATACTTTTTACACCGGAAAATGGGAAGCCACGAGGGAAGATGATATGAGACATTGGTCAA 390 Query 411 AGTTCCCGTCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGATGGTGGCAGGCAATTGG 470 |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 391 AGTTTCCATCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGACGGTGGCAGGCAATTGG 450 Query 471 ATCTTAACAATTATCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAACGTTG 530 |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 451 ATCTTAACAACTACCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAATGTTG 510 Query 531 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGATG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 511 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGACG 570 Query 591 GTTCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 650 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 GATCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 630 Query 651 AAACAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 710 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 631 AAACAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 690 Query 711 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTCTAA-ACATGCGATGCACG 769 ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 691 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTG-AGCACATGCGAAGCACG 749 Query 770 TGATCCAGTACATTATGACGTGTCAATTATTATAAATTATT-AGTAAGATAtttt 823 |||||||||||||| |||||||||||| |||||||||||| | ||||||||||| Sbjct 750 TGATCCAGTACATTC-GACGTGTCAATTGTTATAAATTATTGA-TAAGATATTTT 802 Score = 56.5 bits (30), Expect = 3e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30 |||||||||||||||||||||||||||||| Sbjct 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35759296146 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5