BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37680.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482768 jgi|Araly1|482768|fgenesh2_kg.4__1828__AT2G37680.1 1271 0.0
> Ahg482768 jgi|Araly1|482768|fgenesh2_kg.4__1828__AT2G37680.1
Length=802
Score = 1271 bits (688), Expect = 0.0
Identities = 747/775 (96%), Gaps = 5/775 (1%)
Strand=Plus/Plus
Query 51 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 GGAAGAAAATGCCGGTGAGAGTTGTTGAGAGCAACACGCCTGCTCAAGTTTCAGGAACTG 90
Query 111 ATCCTGGGAATCGATCACCACTTCCCCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 170
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 91 ATCCTGGGAATCGATCACCACTTCCGCCTAGTTCACTTCTCGGCGCTGGCCAGGCATTTT 150
Query 171 CTGGTACGCAAAATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGA 230
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 151 CTGGTACGCAAAATGTTTCTAATCAGCAGAAGGAGGAAGCTTGGAGAGTTAACGTCCAGA 210
Query 231 TACAGGGTATTGACCTTGAACATGGTTATCTTTGTGGCACCATGGAAGCTCTAAACGTTC 290
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 211 TACAGGGAATTGACCTTGAACATGGCTATCTTTGTGGTACCATGGAAGCTCTAAACGTTC 270
Query 291 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CCATGGCAGACACTCCTGTCATAACATTCTGGGAAGGGGAAATCGTTGATGGAAAGAATT 330
Query 351 ATACCTTTTACACCGGAAAATGGGAAGCAACGAGGGAAGATGATATGAGACATTGGTCAA 410
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 331 ATACTTTTTACACCGGAAAATGGGAAGCCACGAGGGAAGATGATATGAGACATTGGTCAA 390
Query 411 AGTTCCCGTCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGATGGTGGCAGGCAATTGG 470
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 391 AGTTTCCATCTTTTTCGCCTCTTCAGGGACAAGTTGAATCTGACGGTGGCAGGCAATTGG 450
Query 471 ATCTTAACAATTATCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAACGTTG 530
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 451 ATCTTAACAACTACCCTTATATATTTATGAGATGGAAAGAGCAATACTTTGTAAATGTTG 510
Query 531 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGATG 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 511 GCACAGATTGTGGACTAACAATAGCTGGATTTTACTACGTATGCTTCTCCTGCAGCGACG 570
Query 591 GTTCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GATCCATCAGCGGTTTCTATTATGATCCAAACAGCAGTCCGTTTCAGAAGCTGGAGCTGA 630
Query 651 AAACAGTTAACGAAGGAAGATCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 710
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAACAGTTAACGAAGGAAGGTCTGGTTTCAGCTTTTCTTCTTACGAGTTGCAATGATGAA 690
Query 711 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTCTAA-ACATGCGATGCACG 769
||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 691 TGCTACCAAAATCATCAGACAGCGCCATATGATACTCTCGTG-AGCACATGCGAAGCACG 749
Query 770 TGATCCAGTACATTATGACGTGTCAATTATTATAAATTATT-AGTAAGATAtttt 823
|||||||||||||| |||||||||||| |||||||||||| | |||||||||||
Sbjct 750 TGATCCAGTACATTC-GACGTGTCAATTGTTATAAATTATTGA-TAAGATATTTT 802
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30
||||||||||||||||||||||||||||||
Sbjct 1 GATTTGGTCGCACCAAAGATCGGATTTTTA 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5