BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37700.1
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321478 jgi|Araly1|321478|fgenesh1_pm.C_scaffold_4001535 2488 0.0
Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2 135 9e-31
Ahg923354 jgi|Araly1|923354|scaffold_104635.1 122 7e-27
> Ahg321478 jgi|Araly1|321478|fgenesh1_pm.C_scaffold_4001535
Length=1866
Score = 2488 bits (1347), Expect = 0.0
Identities = 1710/1879 (91%), Gaps = 50/1879 (3%)
Strand=Plus/Plus
Query 33 ATGGCGTCTAGACCAGGTTTTCTCACGGACTGGCCATGGACACCTCTTGGAAGCTTTAAG 92
|||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGTCGAGATCAGGTTTTCTCACGGACTGGCCATGGACTCCTCTTGGAAGCTTTAAG 60
Query 93 TAC-TTGTTGTTGGCCCCGCTGGTTTTTGACAGCATCTACTCATATGCAACCATACGAGA 151
||| | | ||||||||||||| ||| | |||||||||||||||||||||||||| |||||
Sbjct 61 TACATAG-TGTTGGCCCCGCTTGTTGTCGACAGCATCTACTCATATGCAACCATGCGAGA 119
Query 152 TCACGAAAAACTTTTGATAGTGGCCGTGACGGTGTGGCGGATTGTTCATAGCCAAATATG 211
|||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 120 TCACGAGAAACTTATGATAGTGGCATTGGCGGTGTGGCGGATTGTTCATAGCCAAATATG 179
Query 212 GATAAGTTTATCCCGTTACCAAACTGCAAAAGGAACCAAGCGGATCCTGAACAAGTCCAT 271
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 180 GATAAGTTTCTCCCGTTACCAAACCGCAAAAGGAACCAAGCGGATCGTGAACAAGTCCAT 239
Query 272 AGAGTTTGACCAAGTTGACCGAGAACGAACCTGGGACGATCAGATCATCTTCAACACTCT 331
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 240 AGAGTTTGATCAAGTTGACCGAGAACAAACCTGGGACGATCAGATCATCTTCAACTCTCT 299
Query 332 CATTGTTTACTTAACCAAAGTGTACGTCTCAGGGACCAGTACCATTCCCTTCTGGCGAAC 391
|||| |||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||
Sbjct 300 CATTCTTTACTTAACCAAACTGTACGTCTTAGGGACCAATACCATTTCCTTCTGGCGAAC 359
Query 392 CGATGGAGTGATCTTAGTCGCTCTCCTCCATGCTGGTCCGGTGGAGTTCATCTACTACTG 451
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 360 CGATGGATTGATCTTAGTCGCTCTCCTCCATGCTGGTCCGGTCGAGTTCATCTACTATTG 419
Query 452 GTTTCATCGAGCCCTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACCACCATTC 511
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GTTCCACCGAGCACTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACCACCACTC 479
Query 512 CTCCATTGTCACCGAGCCGATCACTTCGGTGGTACATCCGTTTGCAGAGCACATCGGATA 571
||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||
Sbjct 480 TTCCATTGTCACCGAGCCAATCACTTCGGTAGTACATCCGTTTGCGGAGCACATTGGATA 539
Query 572 TACGTTAATCTTGGGGCTACCGCTAATAACGACTTTTATGTGTGGAACGGTCTCGG-TAG 630
||||||||||||||||||||| |||| || |||||| | || || |||||||||| | |
Sbjct 540 TACGTTAATCTTGGGGCTACCTCTAACAATGACTTTGCTATGCGGCACGGTCTCGGCT-G 598
Query 631 TCTCCATTGC-CTTATA-CCTAACTTACATAGATTTTATGAACAATATGGGTCACTGCAA 688
|||||||| | | |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCCATT-CTCATATATGC-AACTTACATAGATTTTATGAACAATATGGGTCACTGCAA 656
Query 689 CTTTGAGCTCATTCCGAAATTTTTATTCTCTC-TTTTACCTCCACTCAAGTTCCTCTGCT 747
||| ||||||||||||| || | | ||||| | |||||||||| || |||||||| ||||
Sbjct 657 CTTCGAGCTCATTCCGAGATCTCTCTTCTC-CATTTTACCTCCTCTTAAGTTCCTTTGCT 715
Query 748 ACACTCCCTCGTTTCATTCGCTCCACCATACGCAATTCAGGACGAACTACTCTCTATTCA 807
|||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 716 ACACTCCCTCGTTTCACTCGCTCCACCACACACAATTCAGGACAAACTACTCTCTATTCA 775
Query 808 TGCCAATGTACGACTACATCTATGGCACCACCGACGAGTGCAGTGACTCATTATACGAAA 867
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 776 TGCCAATGTACGACTACATCTATGGGACTACCGACGAGTGCAGTGACTCATTGTACGAAA 835
Query 868 CATCGTTGGAGAAAGAAGAAGAGAAGCCTGACGCGATTCATCTTACTCATCTAACATCAC 927
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 836 CATCGTTGGAGAAAGAAGAAGATAAGCCTGACGCGATTCATCTGACCCATCTAACATCAC 895
Query 928 TCGACTCTATTTACCATCTCCGGCTTGGCTTTGCTTCCCTCTCCTCT-CACCCGCTCTCT 986
| ||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||
Sbjct 896 TGGACTCTATTTACCATCTCCGGCTCGGCTTGGCTTCCCTCTCCT-TGCACCCGCTCTCT 954
Query 987 TCCCGGTGTTACCTATT--TC-TCATGAAGCCCTTCGCTCTTATCCTCTCCTTCATTCTC 1043
|||| |||||||||||| || | |||||||||||| ||| |||| ||||||||||||||
Sbjct 955 TCCCAGTGTTACCTATTCATCATGATGAAGCCCTTCACTCATATCATCTCCTTCATTCTC 1014
Query 1044 AGGTCCTTCTCTTTTCAAACCTTTGTCGTCGAGAGAAACCGCTTCCGTGATCTCACACTT 1103
| || |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1015 ACTTCATTCTCTTTTCCAACCTTCGTCTTCGAGAGAAACCGCTTCCGTGATCTCACACTT 1074
Query 1104 CACTCCCACCTTCTTCCCAAGTTCTCCTCTCATTACATGTCGCACCAGCAGAAAGAATGT 1163
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 CACTCCCACCTTCTTCCCAAGTTCTCCTCTCATTACATGTCGCAGCAGCAGAAAGAATGT 1134
Query 1164 ATCAACAAAATGATAGAGGCGGCTATTCTTGAAGCGGATAAGAAGGGTGTGAAAGTAATG 1223
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1135 ATCAACAAAATGATAGAGGCGGCTATTCTTGAAGCGGAGAAGAAGGGTGTGAAAGTAATG 1194
Query 1224 AGTTTGGGACTATTGAACCAGGGTGAAGAATTAAATGGGTATGGAGAAATGTACGTAAGG 1283
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1195 AGTTTGGGGCTATTGAACCAGGGAGAAGAATTAAATGGGTATGGAGAAATGTACGTGAGG 1254
Query 1284 AGGCATCCAAAGCTAAAGATAAGGATAGTGGACGGAGGCAGTCTTGCAGCTGAGGTGGTG 1343
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1255 AAGCATCCAAAGCTAAAGATAAGGATAGTGGACGGAAGCAGTCTTGCAGCTGAGGTGGTG 1314
Query 1344 CTTCATAGCATTCCTGTTGGGACCAAAGAGGTTCTCTTTAGAGGCCAAATCACAAAAGTT 1403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1315 CTTCATAGCATTCCTGTTGGGACCAACGAGGTTCTCTTTAGAGGCCAAATCACAAAAGTT 1374
Query 1404 GCTCGTGCCATTGTCTTTTCTCTTTGCCAAAATGCCATCAAGGTAATGGTGTTGCGCAAG 1463
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1375 GCTCGTGCCATTGTCTTTTCTCTTTGCCAAAATGCCATCAAGGTGATGGTCTTACGCAAG 1434
Query 1464 G-A-AG-A--GCA--TT--CC--ATGC-TCGCCG--AATTCT-TGGACGAT-AAGTG-T- 1505
| | || | || || || || | | | || |||| | ||| || ||| |
Sbjct 1435 GAAGAGCATTCCATGTTCGCCGAATTCTTGGACGATAATTGTAAGGAAAATCTGGTGCTC 1494
Query 1506 --AAGGAA--A--AT-C--TTATTTGGTTGGTGGGAGATGGGCTAAGCACAAAAGAGCAG 1556
|| || | || | | |||||||||||||||||||||||||||| ||||||||||
Sbjct 1495 ACAACCAATTACTATCCAATGATTTGGTTGGTGGGAGATGGGCTAAGCAAAAAAGAGCAG 1554
Query 1557 AAGATGGCAAAAGATGGAACTCTATTTCTTCCTTTCTCTCAATTTCCTCCTA-AAACACT 1615
|||||||||||||| ||||||| |||||||||||||||||||||||||||| || |||
Sbjct 1555 AAGATGGCAAAAGAAAGAACTCTCTTTCTTCCTTTCTCTCAATTTCCTCCTACCAA-ACT 1613
Query 1616 ACGAAAAGACTGCTTTTACCACACCACTCCGGCTATGATTATCCCTCACTCTGCCCAAAA 1675
||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 1614 ACGAAAAGACTGCTTTTACCATACCACTCCGGCTATGATCATCCCGCACGCTGCCCATAA 1673
Query 1676 CATTGATTCTTGTGAGAATTGGCTGGGGAGGAGAGTGATGAGCGCATGGAGAGTTGGTGG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CATTGATTCTTGTGAGAATTGGCTGGGGAGGAGAGTGATGAGCGCATGGAGAGTTGGTGG 1733
Query 1736 GATAGTACACGCGCTTGAAGGGTGGAAGGAACACGAGTGCGGTCTCGACGACAATTCAAT 1795
||||||||| ||||||||||||||| |||||||||||||| || |||| | | ||||
Sbjct 1734 GATAGTACATGCGCTTGAAGGGTGGGAGGAACACGAGTGCAGTTTCGA--A---T-CAAT 1787
Query 1796 CATTAATCCTCCTAGAGTTTGGGAAGCTGCTCTTCGAAATGGTTTCCAACCTCTACTTCT 1855
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1788 CATTAATCCTCCTAGAGTTTGGGATGCTGCTCTTCGAAATGGTTTCCAACCCCTACTTCT 1847
Query 1856 GCCATCTTTAGAGACCTAA 1874
||||||||||||||||||
Sbjct 1848 CCCATCTTTAGAGACCTAA 1866
> Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2
Length=2131
Score = 135 bits (73), Expect = 9e-31
Identities = 268/356 (75%), Gaps = 38/356 (11%)
Strand=Plus/Plus
Query 178 TGACGGTGTGGCGGATTGTTCATAGCCAAATATGGATAAGTTTATCCCGTTACCA-A--A 234
||||| ||||||| || ||||| ||||| |||||||| || | || || ||| | |
Sbjct 236 TGACGCTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCG---CCAGAGGA 292
Query 235 CTGCAAAAGGAACCAAGC-GGATCCTGAACAAGTCCATAGAGTTTGACCAAGTTGACCGA 293
| || || ||||| || | |||| || ||||| |||| ||||| || ||||| ||||||
Sbjct 293 CGGCTAAGGGAACGAA-CAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGA 351
Query 294 GAACGAACCTGGGACGATCAGATCATCTTCAACACTCTCAT--TGTTTACTTAAC-CAAA 350
|| || | |||||||| || |||||||||||||||||| | ||| | | | | ||||
Sbjct 352 GAGCGCTCTTGGGACGACCAAATCATCTTCAACACTCTCCTCATGTAT-C-T--CGCAAA 407
Query 351 GTGT-ACG-TCTCAGG-GACCAGTACCA--TTCCCTTCTGGCGAAC-CGATGGAGTGAT- 403
| | | || |||| | || | ||| ||||| |||| | || ||||||| ||
Sbjct 408 -CATCAAGCTCCCAGGCG-CC--TCCCACCTTCCCCCCTGGAG-ACTAGATGGAGCCATC 462
Query 404 CTTAGTCGCTCTCCTCCATGCTGGTCCGGTGGAGTTCATCTACTACTGGTTTCATC-GAG 462
|| | | ||||| || || | | | |||||||| ||||||||||||| || | |||
Sbjct 463 CTCA-TGGCTCTACTTCA--C--G--C--TGGAGTTCCTCTACTACTGGTTCCA-CAGAG 512
Query 463 CCCTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 518
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CTCTCCACCACCATTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 568
> Ahg923354 jgi|Araly1|923354|scaffold_104635.1
Length=653
Score = 122 bits (66), Expect = 7e-27
Identities = 229/302 (76%), Gaps = 33/302 (11%)
Strand=Plus/Plus
Query 254 GATCCTGAACAAGTCCATAGAGTTTGACCAAGTTGACCGAGAACGAACC-TGGGACGATC 312
|||| || ||||| |||| ||||| || ||||| ||||||| | || |||||||| |
Sbjct 194 GATCGTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAG---G-GCCTTGGGACGACC 249
Query 313 AGATCATCTTCAACA--CTC-TCATTGTTTACTTAACCAA-AGTGTACGTCTCAGGGACC 368
| ||||||||||||| ||| ||| ||||| ||| ||| | || ||||| || |
Sbjct 250 AAATCATCTTCAACACGCTCTTCA-TGTTT-CTT-GTCAACAACAAAC-TCTCA-GG--C 302
Query 369 AG-TACCAT-TCCCT-TCTGGCGAAC-CGATGGAGTGA-TCT--T-AGTC--G-CTCTCC 417
| | || | ||||| ||||| | || || |||| | ||| | |||| | || | |
Sbjct 303 TGCTCCCGTATCCCTCTCTGGAG-ACTAGACGGAGCCATTCTCATGAGTCATGACTATAC 361
Query 418 TCCATGCTGGTCCGGTGGAGTTCATCTACTACTGGTTTCATC-GAGCCCTTCACCACCAC 476
| ||||||||||| || ||||| | ||||| ||||| || | |||| || ||||| |||
Sbjct 362 TTCATGCTGGTCCCGTCCAGTTCTTATACTAGTGGTTCCA-CAGAGCTCTCCACCAGCAC 420
Query 477 TTCC---TCTACTCTCGCTACCATTCTCACCACCATTCCTCCATTGTCACCGAGCCGATC 533
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 421 TTCCTGATCTACTCTCGCTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATC 480
Query 534 AC 535
||
Sbjct 481 AC 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5