BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37720.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1 1657 0.0
Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1 833 0.0
> Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1
Length=1182
Score = 1657 bits (897), Expect = 0.0
Identities = 1092/1187 (92%), Gaps = 10/1187 (1%)
Strand=Plus/Plus
Query 268 GGTGTTATCTGTAGCACTCAATCTAAGATGTATGGTGGAAAAAGTTACATACTCAAAGGG 327
|||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 GGTGTTCTCTCTAGCATTCAATCTAAGATGTTTGGTGGAAAAAGTTACATACTCAAAGGG 60
Query 328 AGTGTATCACTTTCCTTGATCATCCTCATTCTTTTGGTGACAACACTCCTGGTTTCCGCA 387
|||||||||||| ||||||| ||| ||||||||||||||| |||||||| |||| ||| |
Sbjct 61 AGTGTATCACTTGCCTTGATTATCGTCATTCTTTTGGTGATAACACTCCCGGTTACCG-A 119
Query 388 -AAAAACCAGCCTCGCATTTCTCTGATTGAAGTAAAAACTTGTAACTTGGCAAAGGGGGA 446
||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 120 GAAAAACCCGCCTCGCATTTCTCTGATTGAAGTAAAAAAATGTAACGTGGCAAAGGGGAA 179
Query 447 ATGGGTTGAAGACAAGAAGCGGCCATTGTATTCTGGTTTTGAATGTAAACAATGGTTATC 506
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 180 ATGGGTTGAAGATAGGAAGCGACCATTGTATTCTGGTTTTGAATGTAAACAATGGCTATC 239
Query 507 AAACATATTTTCCTGCAGGGTAATGGGCAGACCCGACTTCTCATTTGAGGGTTACCGGTG 566
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 240 AACCATATTTTCCTGCAGGGTAATGGGCAGACCCGATTTCTCATTTGAGGCTTACGGGTG 299
Query 567 GCAGCCAGAAGGTTGCAACATACCAGAGTTTAACAGAGTCAACTTCTTGAGAAGAATGCA 626
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 300 GCAGCCAGAAGGTTGCAACATTCCAGAGTTTGACAGAGTCAACTTCTTGAGAAGAATGCA 359
Query 627 GAACAAGACTATAGCATTTATAGGAGACTCCTTGGGAAGGGAACAATTTCAATCCCTGAT 686
||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 360 GAACAAGACGATAGCATTTATAGGAGACTCCTTGGGACGGCAACAGTTTCAATCCCTGAT 419
Query 687 GTGTATGGCCACTGGAGGTAAAGAGAGTCCGGAGGTTCAAAACGTGGGATCGGAGTATGG 746
||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||
Sbjct 420 GTGTATGGCCACTGGAGGTAAAGAGAGGCCAGAGGTTCAAAACGTGGGATGGGAGTACGG 479
Query 747 TCTTGTGATACCTAAAGGAGCTCCTCGTCCTGGTGGTTGGGCTTATAGGTTTCCGACCAC 806
||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 480 TCTGGTGAAACCTAAAGGAGCTCCTCGTCCTGATGGTTGGGCTTATAGGTTCCCGACCAC 539
Query 807 AAACACAACGGTTTTGTCTTATTGGTCAG-CTAGTTTAACAGATTTGGTACCGATGAACA 865
|||||||||| |||||| ||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 540 AAACACAACGATTTTGTTTTATTGGTC-GTCTACTTTAACAGATTTGGTACCGATGAACA 598
Query 866 ATACAGATCCACCTCATCTTATTGCAATGCATCTTGACCGTCCACCAGCATTCATAAGAA 925
| ||| ||||||||| ||||| |||||||||||| ||||| |||||||||||||||| ||
Sbjct 599 ACACAAATCCACCTCCTCTTACTGCAATGCATCTGGACCGACCACCAGCATTCATAAAAA 658
Query 926 ACTACCTTCACCGTTTCCATGTATTGGTTCTAAACACCGGTCACCATTGGAGCAGAGATA 985
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 659 ACTACCTTCACCGTTTCCATGTATTGATTCTAAACACCGGTCACCATTGGAGCAGAGGTG 718
Query 986 AGATAGaaaaaaaTCATTGGGTGATGCACGTAAATGGAACACGTG-TCGAAGGCGGATAT 1044
|||| ||| || ||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 719 AGATCGAAGAACATCATTGGGTGATGCACGTAAATGGAACACGGGTTC-AAGGCGGATAT 777
Query 1045 TTCAAGAACGTTGAAAACGCTAAA-ATTTTTACAATACACAGCCTGGTGAAGTGGCTTGA 1103
||||| | || | |||||||||| | ||||||||||||||| || ||||||||||| ||
Sbjct 778 CTCAAGGAGGTCGGAAACGCTAAAGA-TTTTACAATACACAGACTCGTGAAGTGGCTCGA 836
Query 1104 TGCACAACTTCCATTGCATCCACGGTTGAAAGCTTTCTTTACGACGATTTCCCCTAGGCA 1163
||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 837 TGCGCAAATTCCGTTGCATCCGCGGTTGAAAGCTTTCTTTACGACGATTTCCCCAAGGCA 896
Query 1164 TGAAAAGTGTAACAATACTATCCCTTTGTCTAGAGGAAGCAAAATCACAGGCGAAGGTGG 1223
|| ||||||||| ||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 897 TGGAAAGTGTAATAATACGGTCCCTTTGTCTAGAGGAAGCAAAATAACAGGCCATGGTGG 956
Query 1224 ATCGCTCGATACAATAGTTGAGAGTGCTGTGAATGGGACAAGGGTCAAGATTCTTGACAT 1283
||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 ATCTATGGATACAATAGTCGAGAGTGCTGTGAATGGGACAAAGGTCAAGATTCTTGACAT 1016
Query 1284 AACTGCACTTTCTAAACTAAGAGATGAAGCTCATATCGCAGGGTGTAAACTCAAACCGAA 1343
||||||||||||| | |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1017 AACTGCACTTTCTGAGCTAAGAGATGAAGCTCATATTGCAGGGTCTAAACTCAAACCGAA 1076
Query 1344 AAAGGCGAGTAACGTGACTTC-AGCTCCAACGTTCAACGATTGCTTGCATTGGTGCTTAC 1402
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1077 AAAGGCGAGTAACGTGACTTCTA-CTCCAACGATCAACGATTGCTTGCATTGGTGCTTAC 1135
Query 1403 CCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCACAGCTTTGA 1449
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1136 CCGGGATCCCGGATACTTGGAATGAACTTCTCATAGCCCAGCTTTGA 1182
> Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1
Length=1528
Score = 833 bits (451), Expect = 0.0
Identities = 656/752 (87%), Gaps = 26/752 (3%)
Strand=Plus/Plus
Query 426 TTGTAACTTGGCAAAGGGGGAATGGGTTGAAGACAAGAAGCGGCCATTGTATTCTGGTTT 485
||||||||| |||||||| |||||||||||||| |||| | |||||||||||||||||
Sbjct 383 TTGTAACTTTGCAAAGGGAAAATGGGTTGAAGACCGGAAGAGACCATTGTATTCTGGTTT 442
Query 486 TGAATGTAAACAATGGTTATCAAACATATTT--TCCTGCAGGGTAATGGGCAGACCCGAC 543
||||||||||||||||||||||| || || | || || || ||||||||||||||||
Sbjct 443 TGAATGTAAACAATGGTTATCAA-CA-ATGTGGTCATGTAGAATAATGGGCAGACCCGAT 500
Query 544 TTCTCATTTGAGGGTTACCGGTGGCAGCCAGAAGGTTGCAACATACCAGAGTTTAACAGA 603
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 501 TTCTCATTTGAGGGTTATCGGTGGCAGCCAGAAGGTTGCAACATGCCACAGTTTGACAGA 560
Query 604 GTCAACTT-CTTGAGAAGAATGCAGAACAAGACTATAGCATTTATAGGAGACTC-CTTGG 661
||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 561 TTCA-CTTTCTTGACAAGAATGCAGAACAAGACGATAGCATTTATAGGAGACTCACT-GG 618
Query 662 GAAGGGAACAATTTCAATCCCTGATGTGTATGGCCACTGGAGGTAAAGAGAGTCCGGAGG 721
|| || |||| ||||||||||||||||||||||||| ||| ||| |||| || || ||||
Sbjct 619 GACGGCAACAGTTTCAATCCCTGATGTGTATGGCCAGTGGTGGTGAAGATAGCCCAGAGG 678
Query 722 TTCAAAACGTGGGATCGGAGTATGGTCTTGTGATA-CCTAAAGGAGCTCCTC-GTCCTGG 779
||||||||||||||| |||||| ||||| |||| | || |||||||||| || ||||||
Sbjct 679 TTCAAAACGTGGGATGGGAGTACGGTCTGGTGAAAGCC-AAAGGAGCTC-TCCGTCCTGA 736
Query 780 TGGTTGGGCTTATAGGTTTCCGACCACAAACACAACGGTTTTGTCTTATTGGTCAGCTAG 839
||||||||||||| |||| || ||||||||||||||| | |||| |||||||||||||||
Sbjct 737 TGGTTGGGCTTATCGGTTCCCAACCACAAACACAACGATCTTGTATTATTGGTCAGCTAG 796
Query 840 TTTAACAGATTTGGTACCGATGAACAATACAGATCCACCTCA-TCTTATTGCAATGCATC 898
|||| ||||||||||||| |||||||| |||||||||||| | ||||| |||||||||||
Sbjct 797 TTTATCAGATTTGGTACCAATGAACAACACAGATCCACCT-AGTCTTACTGCAATGCATC 855
Query 899 TTGACCGTCCACCAGCATTCATAAGAAACTACCTTCACCGTTTCCATGTATTGGTTCTAA 958
| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 856 TGGACCGTCCACCAGCATTCATGAGAAACTACCTTCACCGTTTCGATGTATTGGTTCTGA 915
Query 959 ACACCGGTCACCATTGGAGCAGAGATAAGATAGaaaaaaaTCATTGGGTGATGCACGTAA 1018
|||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||| ||||
Sbjct 916 ACACCGGTCACCATTGGAACAGAGGGAAGATCGAAGGAAACCATTGGGTGATGCATGTAA 975
Query 1019 ATGGAACAC-GTGTCGAAGGCGGATATTTCAA-GA-A-CGTTGAAAACGCTAAA--ATTT 1072
||||||||| | |||||||||| |||| |||| || | | |||| ||| ||| ||||
Sbjct 976 ATGGAACACAG-GTCGAAGGCGAATATCTCAAAGATATCA--GAAA-CGC-AAAGGATTT 1030
Query 1073 TTACAATACACAGCCTGGTGAAGTGGCTTGATGCACAACTTCCATTGCATCCACGGTTGA 1132
| |||||||||||| | ||||||||||| |||||||| ||||| |||||||| |||||||
Sbjct 1031 T-ACAATACACAGCGTTGTGAAGTGGCTCGATGCACAGCTTCCGTTGCATCCGCGGTTGA 1089
Query 1133 AAGCTTTCTTTACGACGATTTCCCCTAGGCAT 1164
|||||||||| | ||| ||||| || ||||||
Sbjct 1090 AAGCTTTCTTCAGGACAATTTCTCCGAGGCAT 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5