BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37730.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934466 jgi|Araly1|934466|scaffold_402454.1 2335 0.0
> Ahg934466 jgi|Araly1|934466|scaffold_402454.1
Length=1640
Score = 2335 bits (1264), Expect = 0.0
Identities = 1491/1602 (93%), Gaps = 10/1602 (1%)
Strand=Plus/Plus
Query 1 ATGGCCATCTTCGATCCGTTTAAGCTCCACCATAAGCCGCCGTCGATTTTTCCGGCAACA 60
||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 22 ATGGCCATCTTCGATCCGTTTAAACTCCGCCATAAACCGCCGTCGATTTTTCCGGCAACG 81
Query 61 ACTGTAAAACCAAGCCATGTTCTTTCCCTCGTCGCTAAGTTCTTCTTCACCATATGCATC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 82 ACTGTAAAACCAAGCCATGTTCTTTCCCTCGTCGCCAAGTTCTTCTTCACCATCTGCATC 141
Query 121 TTCATCTCCGTTGCTATGATCTCCTTCTACATAATCTTCTTCGGTTGCTCCGATTGCCAC 180
|||||| |||||||||||| ||||||||| || |||| |||||||||||| ||||||
Sbjct 142 GTCATCTTTTTTGCTATGATCTTCTTCTACATCATATTCTCCGGTTGCTCCGACTGCCAC 201
Query 181 CACATCACCGGCCTCCGTCGCTTAGGTCCTGAAAATGTAAACTTAACTACCAACTCCTCA 240
||||||| ||||| |||||||||||| ||||| |||||||||| ||||||||||| |||
Sbjct 202 CACATCAACGGCCACCGTCGCTTAGGCCCTGACAATGTAAACTCCACTACCAACTCTTCA 261
Query 241 GCCTCCTCC-TCGACTATCCGCCGG-CCGAATCAGTCCTCGGAGGCTACTGATATCTCCC 298
||||||||| | || |||| ||| | |||||||||||||||||| || ||||||||||
Sbjct 262 GCCTCCTCCTTAAAC-ATCC-TCGGACAGAATCAGTCCTCGGAGGCCACCGATATCTCCC 319
Query 299 ACATAGCTTTCGGGATAGGTGGCTCCATTCAAACGTGGAGAGATCGCAGCCGCTACTCCG 358
|||||| ||||||||| |||||||| ||||||||||||||||||||||| || |||||||
Sbjct 320 ACATAGTTTTCGGGATTGGTGGCTCAATTCAAACGTGGAGAGATCGCAGTCGATACTCCG 379
Query 359 AGCTCTGGTGGCGTCCCAACGTCACACGCGGCTTCATATGGCTTGACGAAGAACCGCCTC 418
||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||
Sbjct 380 AGCTCTGGTGGCGTCCCAATGTCACACGCGGCTTCGTATGGCTTGAGGAAGAACCGCCTC 439
Query 419 TTAATATGACATGGCTCTCAACTTCTCCACCGTACCAAGTCTCGGCGGATACCTCCCGGT 478
|||||||||| |||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 440 TTAATATGACGTGGCTCCCGACTTCTCCGCCGTACCAAGTATCGGCGGATACCTCCCGGT 499
Query 479 TCAGTTACACTTGCTGGTATGGTTCAAGATCAGCTATACGAATGGCGAGAATTATCAAAG 538
||| |||||||||||||| |||||| |||||||||||||||||||||||||| || ||||
Sbjct 500 TCAATTACACTTGCTGGTTTGGTTCGAGATCAGCTATACGAATGGCGAGAATCATTAAAG 559
Query 539 AGACTTTTGAGCTAGGGTTAACGGACGTGAGATGGTTCATAATGGGTGACGACGACACCG 598
||| ||| | ||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 560 AGAGTTTCGGGCTAGGGTTAACGAACGTGAGATGGTTCGTGATGGGTGACGACGACACCG 619
Query 599 TTTTCTTTGTGGATAATCTTATAACGGTTCTAAATAAGTATGATCACAATCAAATGTATT 658
||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 620 TTTTCTTTGTGGACAATCTTGTAACGGTTTTGAATAAGTATGATCACAATCAAATGTATT 679
Query 659 ACATCGGAGGAAATTCCGAGAGTGTGGAACAAGACATTGTTCACTCTTACGCCATGGCTT 718
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 680 ACATCGGAGGAAATTCAGAGAGTGTGGAACAAGACATAGTTCACTCTTACGCCATGGCTT 739
Query 719 ACGGTGGTGGAGGAATAGCAATTAGCTATCCATTGGCCGTCGAGCTTGTAAAGTTACTCG 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 740 ACGGTGGTGGAGGAATAGCAATTAGCTATCCATTGGCCGTGGAGCTTGTAAAGATACTCG 799
Query 779 ATGGTTGTATTGATCGTTACGCATCGTTATATGGATCTGATCAAAAGATTGAAGCTTGTT 838
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 800 ATGGTTGTATTGATCGATACGCATCGTTATACGGATCTGATCAAAAGATTGAAGCTTGTA 859
Query 839 TAAGCGAGATTGGAGTTCCCCTGACCAAGGAACTAGGGTTCCATCAGGTTGACATACGTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TAAGCGAGATTGGAGTTCCCCTGACCAAGGAACTAGGGTTCCATCAGGTTGACATACGTG 919
Query 899 GCAATCCATACGGTTTACTAGCTGCCCATCCGGTGGCTCCTCTGGTTACGCTCCACCATC 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 920 GCAATCCATACGGTTTACTAGCTGCCCATCCGGTGGCTCCTCTTGTTACGCTCCACCATC 979
Query 959 TCGACTATGTTGATCCAATATTTCCGGGGACGACTCAAATAGACGCCTTAAGAAGACTCG 1018
||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| |
Sbjct 980 TCGACTATGTTGACCCAATATTTCCGGCGACGACCCAAATAGACGCCCTAAGAAGACTTG 1039
Query 1019 TATCGGCCTATAAGACGGATCCAAGCCGGATCATCCAGCACAGCTTCTGCCATGACCAGA 1078
|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1040 TATCGGCCTACAAGACGGATCCAAGACGGATCCTCCAGCACAGCTTCTGCCATGACCCGA 1099
Query 1079 CCCGTAATTGGTATGTGTCCGTTTCATGGGGCTATACCATCCAAATTTATCCAACTTTGG 1138
|||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1100 CCCGGGACTGGTTTGTGTCCGTTTCATGGGGCTATACCATCCAAATTTATCCTTCTTTGG 1159
Query 1139 TCACCGCTAAAG-AGCTTGAGACGCCATTTCTTACGTTCAAGTCGTGGCGGACTTCGAGC 1197
||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1160 TCACCGC-AAAGGAGCTTGAGACGCCATTTCTTACGTTCAAGTCGTGGCGGACGTCAAGC 1218
Query 1198 TCTGAGCCTTTCTCGTTTGATACCCGACCCATCAGTGAAGATCCGTGCGAGAGACCCCTT 1257
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1219 TCTGAGCCTTTCTCGTTTGATACCCGACCCATCAGCGAAGATCCGTGCGAGAGACCCATT 1278
Query 1258 GTCTATTTCTTGGACCGGGTTTATGAGGTCGGTTCGGGTCAGACGCTTACGACGTATCGG 1317
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1279 GTTTATTTCTTGGACCGGGTTTATGAGGTCGGGTCGGGTCAGACTCTTACGACGTACCGG 1338
Query 1318 AAACATGTTGAAGTGGGCGAGAGTACACAATGTAATTCGCCTGATTATTCTCGTGCCAAC 1377
||||||||||| || ||||||| |||||||||| |||| ||||||||||||||| |||
Sbjct 1339 AAACATGTTGATGTCGGCGAGA---CACAATGTAAATCGCTTGATTATTCTCGTGCTAAC 1395
Query 1378 CCGGTCGAGTTCATCGACGTTTCAACTACTACGTTGACGCCGGATCTTTGGAAAATGGCG 1437
|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 1396 TCGGTCGAGTTCATCGACGTTTCCGCTACTACGTGGATGCCGGATCTTTGGAAAATGGCG 1455
Query 1438 CCACGTAGACAATGTTGTGAAATTGTCAACAGTGAAGAAGACTCAGAAAGCGTAATCAAT 1497
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CCACGTAGACAATGTTGTGAAGTTGTCAACAGTGAAGAAGACTCAGAAAGCGTAATCAAT 1515
Query 1498 GTCAAGATACGGCATTTTAATCCTTTGGAAAGTGTAACTCCTCAGTCAAAGCATCCGAAC 1557
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1516 GTCAAGATACGGCATTTTAATCCTTTCGAAAGTGTAACTCCTCAGTCAAAGCATCCGAGC 1575
Query 1558 GACGAATGGACCGACTCCGTTTTATCTACAGAGACTA-TATA 1598
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1576 GACGAATGGACCGACTCCGTTTTATCTATAGAGACTACTATA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5