BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37740.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934467 jgi|Araly1|934467|scaffold_402455.1 1408 0.0
> Ahg934467 jgi|Araly1|934467|scaffold_402455.1
Length=961
Score = 1408 bits (762), Expect = 0.0
Identities = 872/924 (94%), Gaps = 12/924 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAACCTGGTGGCTTCTGGATCCCCAAGAAAAGCAACAAAGAGTCATCTTGGGAA 60
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 21 ATGGAGAAACCTGGTGGCTTCTGGATCCCTAAGACAAGCAACAAAGAGTCATCGTGGGAA 80
Query 61 GAGCTGGCCTTTGCAGAAGACGATGCCGCCGGATCTTTGTGGCCGCCAAGATCTTATACG 120
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 81 GAGCTGGCCTTTGCGGAAGACGATGCAGCCGGATCTTTGTGGCCGCCTAGATCTTACACG 140
Query 121 TGTAGCTTCTGCCGGAGAGAATTTAAATCGGCTCAAGCCCTCGGTGGCCATATGAACGTT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 141 TGTAGCTTCTGCCGGAGAGAGTTTAAATCGGCTCAAGCCCTCGGTGGCCACATGAACGTT 200
Query 181 CACCGAAGAGACAGAGCACGGCTTAAGCAAGCCGACGACCAATACTTATTCCCCAAATCT 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 201 CACCGAAGAGACAGAGCACGGCTTAAGCAAGCCGACGAACAATACTTATTCCCCAAATAT 260
Query 241 TCTTCGTCTCCAGAGTATCCATCTCATAAAGATAGCGATAATATTCATGAAACCTCTTGC 300
|||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 261 CCTTCGTCTCCGGAGTATCCATCTCATAAAGATAACGATAATATTCATGAGACCTCTAGC 320
Query 301 TATACTTTGGTTTTTAACACCAAACCTAATTATTTTAAGACTCAACACTCTTGTGTTATT 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TATACTTTGGTTTTTAACTCCAAACCTAATTATTTTAAGACTCAACACTCTTGTGTTATT 380
Query 361 GATCTTTCTTCGTCTTCTTCTTTACCATATTTGACTCCTTCTAGGGTTTCTTCTGGTTTG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GATCTTTCTTCTTCTTCTTCTTTACCATATTTGACTCCTTCTAGGGTTTCTTCTGGTTCA 440
Query 421 CCTGGAAAGC--AACA-TACTTCTTCTTCTCCTCCTTCTTTCGTTGTAGAACCTTCCAAG 477
|||||||||| || | | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 441 CCTGGAAAGCAAAAAACTTCTTCTTCTTCTCCTCCTTCTTTCATTGTAGAACCTTCCAAG 500
Query 478 AACTCTAAATATATTCCCTCTTCTTCCCCATGGTCGTGCCCAAGTACTGTTGTGGAGCAA 537
||||||||| | ||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 501 AACTCTAAAAAGATTCCCTCTTCTTCCCCATGGTCGTTCCCGAGTACTTTTGTGGAGCAA 560
Query 538 AAGAGTTGTGATCTATATGAAATTCCGGCTATGGAAGGAGAAAAGAAGAGAAAGACTGAG 597
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 AAGCGTTGTGATCTATATGAAATTCCGGCTACGGAAGGAGAAAAGAAGAGAAAGACTGAG 620
Query 598 AGTGATGTGCCAAAAATCGGGCATAAAGCAAAACTTAGTCTTGGAAACACCACTGATCTC 657
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 621 AGTGATGTGCCGAAAATCGGGCATAAAGCAAAAATTAGTCTTGGAAACACCACTGATCTC 680
Query 658 TCGGTGAGTATGAATCTGGTCATCCACCAAAGTTTTCCGATTACTGCTCACGGTAGCGAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TCGGTGAGTATGAATCTGGTCATCCACCAAAGTTTTCCGATTACTGCTCACGGTAGCGAT 740
Query 718 GAAGAGATTGGTAGGG-TGGATATCCGTAAAAGAAGACGA--A-GACATGAGAGTCCGTC 773
|||||||| ||||||| || |||||||||| ||||||||| | ||||||||||||||||
Sbjct 741 GAAGAGATCGGTAGGGGTG-ATATCCGTAAGAGAAGACGACGAAGACATGAGAGTCCGTC 799
Query 774 GCAGCAGTCGATTT-TCATTTCAAGTTTATCTTGTAAGAGTGACATAATTACAAGAAACG 832
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GCAGCAGTC-AGTTCTCATTTCAAGTTTATCTTGTAAGAGTGACATAATTACAAGAAACG 858
Query 833 AGGAAAGCAAACACAAAGGTGATCGCTTTGAGGATTTAGATCTTGAGCTTAGGCTAGGGA 892
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 859 AGGAGAGCAAACACAAGGGTGATCGCCTTGAGGATTTAGATCTTGAGCTTAGGCTAGGGA 918
Query 893 -CTGATCCACCAAAAGGAATTTGA 915
| ||||||||||| |||| ||||
Sbjct 919 TC-GATCCACCAAAGGGAAATTGA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5