BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37750.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482777 jgi|Araly1|482777|fgenesh2_kg.4__1837__AT2G37750.1         606    4e-173


> Ahg482777 jgi|Araly1|482777|fgenesh2_kg.4__1837__AT2G37750.1
Length=455

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 418/460 (91%), Gaps = 11/460 (2%)
 Strand=Plus/Plus

Query  19   AACAAGATAAATGGAGGGTCTAATTCCGTTAGTATACAAAGCCGTCATGCAAATCCGTTA  78
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AACAAGAGAAATGGAGGGTCTAATTCCGTTAGTATACAAAGCCGTCATGCAAATCCGTTA  60

Query  79   CGGTAACGAGTCGCAGCAACTTTCTTCTTCTTACTACGTTCGTCTTCCCGGTGATTCGGG  138
            ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  61   CGGTAACGAGTCGGAGCAACTTTCTTCTTCTTACTACGTTCGTCTTCCGGGCGATTCGGG  120

Query  139  TCGGTTTGTAAGATCCGATTTAGATGTATCGGGTCCTGGATCTAATTCCTCCAATAGGGC  198
            |||||| | |||||||||||| ||||||||||| | |||||||  | | ||||||| |||
Sbjct  121  TCGGTTCGGAAGATCCGATTTCGATGTATCGGGACTTGGATCT--T-CTTCCAATACGGC  177

Query  199  GTCGTCGTCGACAAGCACAACTACGTTTGCTGTTTACGCGGGAGTCCAGTCACCTGTTTC  258
            ||| ||||| || | ||| |||||||||||||||||| |||||||||| ||||| |||||
Sbjct  178  GTCATCGTCTACGACCACTACTACGTTTGCTGTTTACACGGGAGTCCAATCACCCGTTTC  237

Query  259  TCGTCAGGTTGTCACGTGATTCACACGCGCTTTTTGAAGGAACCTGAAGTTGCGTGTGAG  318
            ||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||
Sbjct  238  TCGTCAGGTTGTCACGTGATTCACACGCGCTTCAC-AAGGAACCTGAAGATGCGTGTGAG  296

Query  319  GGAAGGGTTCGTGACTTTTGTTTTGTGCGttt--ttttt-ttGTAAG--TTAGGCTTGGA  373
            ||||||||||||||||||||||||||| ||||  ||||| || || |  |||||||||||
Sbjct  297  GGAAGGGTTCGTGACTTTTGTTTTGTGGGTTTAGTTTTTCTT-TATGCGTTAGGCTTGGA  355

Query  374  CCGGTTTAATAAACCTGATGTAATAATTCGGTTTGGAAAATTGATTT-CTCTAAGCGTAG  432
            |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct  356  CCGGTTTAATAAACCTGATGTAATAATTCGGTTTGGGAGATTGATTTTCTCTAAGCGTAG  415

Query  433  ACTTTAACCCAAAAGGGTGGTCTCGTGGCTTTTGATTTGT  472
             ||||  |||||||||||||||||||||| ||||||||||
Sbjct  416  GCTTTCGCCCAAAAGGGTGGTCTCGTGGCATTTGATTTGT  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5