BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37770.2
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482783 jgi|Araly1|482783|fgenesh2_kg.4__1843__AT2G37770.2 1657 0.0
Ahg333154 jgi|Araly1|333154|fgenesh1_pm.C_scaffold_68000001 684 0.0
> Ahg482783 jgi|Araly1|482783|fgenesh2_kg.4__1843__AT2G37770.2
Length=1057
Score = 1657 bits (897), Expect = 0.0
Identities = 1008/1062 (95%), Gaps = 6/1062 (1%)
Strand=Plus/Plus
Query 1 CAACCACCACCACATCTGATAATGGCAAATGCGATCACATTTTTCAAGCTCAACACCGGC 60
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 CAACCACCACCACATCTTATAATGGCAAATGCGATCACATTCTTCGAGCTCAACACCGGC 60
Query 61 GCTAAGTTCCCTTCGGTGGGTCTTGGAACATGGCAAGCTTCTCCTGGCCTCGTCGGTGAT 120
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 61 GCTAAGTTCCCGTCGGTGGGTCTTGGAACATGGCAAGCTTCTCCTGGCCTTGTTGGCGAT 120
Query 121 GCAGTCGCCGCGGCTGTTAAGATTGGCTATCGTCACATTGATTGTGCTCAGATCTATGGC 180
||||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 121 GCAGTCGCCGCCGCTATTAAGATTGGCTATCGTCATATAGATTGCGCTCAGATCTATGGC 180
Query 181 AACGAAAAAGAGATTGGGGCAGTTCTGAAAAAATTGTTTGAAGACAGAGTAGTGAAACGC 240
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AACGAAAAAGAGATTGGGGCGGTTCTGAAAAAACTGTTTGAAGACAGAGTAGTGAAACGC 240
Query 241 GAGGATTTGTTCATCACCTCCAAACTCTGGTGTACTGATCATGACCCTCAAGATGTCCCG 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GAGGACTTGTTCATCACCTCCAAACTCTGGTGTACTGATCATGACCCTCAAGATGTGCCA 300
Query 301 GAGGCATTGAACAGAACTCTCAAGGATCTGCAGCTTGAATACGTCGATCTTTATCTGATA 360
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GAGGCATTGAACAGAACTCTAAAGGATCTGCAGCTTGACTACGTCGATCTTTATCTGATG 360
Query 361 CACTGGCCTGCACGGATAAAGAAAGGTTCTGTTGGAATAAAGCCAGAGAACCTTTTGCCT 420
||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 361 CACTGGCCTGCACGGATGAAGAAAGGTTCCGTTGGAATTAAGCCAGAGAACATTTTGCCT 420
Query 421 GTAGATATTCCTAGTACATGGAAAGCGATGGAAGCACTATACGATTCGGGCAAGGCACGA 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GTAGATATTCCTAGTACATGGAAAGCGATGGAAGCACTCTACGATTCGGGCAAGGCACGA 480
Query 481 GCCATAGGTGTAAGCAATTTCTCTACCAAGAAACTAGCTGATCTCTTGGAGTTAGCTCGT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCATAGGTGTAAGCAATTTCTCCACCAAGAAACTAGCTGATCTCTTGGAGTTAGCTCGT 540
Query 541 GTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCCTTCTTGGCGACAAACTAAGCTACAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 GTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCCTTCTTGGCGACAAACTAAGCTACGA 600
Query 601 GAA-TTCTGCAAATCCAAAGGGGTTCACCTAAGTGCATACTCGCCATTAGGTTCTCCAGG 659
|| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 601 -AAGTTCTGCAAATCCAAAGGGGTTCACCTCAGTGCATACTCACCATTGGGTTCTCCAGG 659
Query 660 GACAACATGGCTGAAGAGCGATGTTTTGAAGAACCCGATACTGAATATGGTTGCGGAAAA 719
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 660 GACAACGTGGCTGAAGAGCGATGTTTTGAAGAACCCGATACTGAATACGGTTGCAGAAAA 719
Query 720 ACTCGGAAAGAGTCCTGCGCAAGTCGCCCTTCGTTGGGGACTCCAAATGGGTCACAGTGT 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 ACTCGGAAAGAGTCCTGCGCAAGTTGCCCTTCGTTGGGGACTCCAAATGGGTCACAGTGT 779
Query 780 GCTTCCCAAGAGTACAAATGAAGGAAGGATCAAAGAGAACTTTAATGTTTTCGACTGGTC 839
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 780 GCTTCCCAAGAGTACCAATGAAGGAAGAATCAAAGAGAACTTTAATGTTTTTGACTGGTC 839
Query 840 AATACCCGATTACATGTTCGCTAAGTTTGCTGAGATTGAACAGGCTAGGTTAGTCACTGG 899
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 840 AATACCCGATGACATGTTCGCTAAGTTTTCTGAGATTGAACAGGCAAGGTTAGTCACTGG 899
Query 900 TTCCTTCCTTGTTCATGAGACACTAAGCCCTTACAAGTCTATTGAAGAATTATGGGATGG 959
||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 900 TTCTTTCTTTGTTCATGAGACACTGAGCCCTTATAAGTCTATTGAAGAATTATGGGATGG 959
Query 960 CGAGATATGATTTTTAGCTGATCTAAATAATGGGAGCTAGGTTTCTCTCTCTGATGAACT 1019
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 960 CGAGATATGATTTTTAGCTGATCTAAATAATGGGAGGT---TTT-TCTCTCTGATGAACT 1015
Query 1020 AGTCAGTATCtttttttttttAATGAATGTTAAATTTATTCA 1061
|||||| |||||||||||||||||||||| |||||||||||
Sbjct 1016 TGTCAGTTTCTTTTTTTTTTTAATGAATGTAAAATTTATTCA 1057
> Ahg333154 jgi|Araly1|333154|fgenesh1_pm.C_scaffold_68000001
Length=1053
Score = 684 bits (370), Expect = 0.0
Identities = 696/852 (82%), Gaps = 28/852 (3%)
Strand=Plus/Plus
Query 47 AGCTCAACACCGGCGCTAAGTTCCCTTCGGTGGGTCTTGGAACATGGCAAGCTTCTCCTG 106
|||||||||| || || ||| | || || || ||||| ||||| ||||| || |||||
Sbjct 26 AGCTCAACACTGGAGCGAAGATACCATCCGTTGGTCTCGGAACGTGGCAGGCCGATCCTG 85
Query 107 GCCTCGTCGGTGATGCAGTCGCCGCGGCTGTTAAGATTGGCTATCGTCACATTGATTGTG 166
| |||||||| | || || | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 86 GTCTCGTCGGAAACGCTGTTGACGCTGCTGTGAAGATTGGCTATCGTCACATTGATTGTG 145
Query 167 CTCAGATCTATGGCAACGAAAAAGAGATTGGGGCAGTTCTGAAAAAATTGTTTGAAGACA 226
|||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||
Sbjct 146 CTCAAATCTATGGCAACGAAAAAGAGATTGGGTTAGTCCTGAAGAAATTGTTTGATGATG 205
Query 227 GAGTAGTGAAACGCGAGGATTTGTTCATCACCTCCAAACTCTGGTGTACTGATCATGACC 286
|||| || || || ||||| |||||||||| |||||||||||||||||| ||||||| |
Sbjct 206 GAGTTGTTAAGCGTGAGGAAATGTTCATCACATCCAAACTCTGGTGTACTTATCATGATC 265
Query 287 CTCAAGATGTCCCGGAGGCA-TTGAACAGAACTCT-CAAGGATCTGCAGCTTGAATACGT 344
||||||| || || |||||| || || |||||| | || ||||||||||||||| |||||
Sbjct 266 CTCAAGAAGTGCCTGAGGCACTT-AATAGAACTTTACA-GGATCTGCAGCTTGACTACGT 323
Query 345 CGATCTTTATCTGATACACTGGCCTGC-ACGGATAAAGAAAGGTTCTGTTGGAAT-AAAG 402
|||||| ||||| || |||||||||| | | | |||||||||||| ||| | |||
Sbjct 324 CGATCTGTATCTCATTCACTGGCCTGTTA-GCCTCAAGAAAGGTTCTACTGGCTTTAAA- 381
Query 403 CCAGAGAACCTTTTGCCTG-TAGATATTCCTAGTACATGGAAAGCGATGGAAGCACTATA 461
||||||||| ||||||| | ||||||||||| ||||||||||| ||||||||||| |
Sbjct 382 CCAGAGAACATTTTGCCAACT-GATATTCCTAGCACATGGAAAGCAATGGAAGCACTCTT 440
Query 462 CGATTCGGGCAAGGCACGAGCCATAGGTGTAAGCAATTTCTC-TACCAAGAAACTAGCTG 520
||| |||||||||| ||||| || ||||| ||||||||||| | | |||||||| || |
Sbjct 441 TGATGCGGGCAAGGCCCGAGCTATTGGTGTCAGCAATTTCTCCT-CAAAGAAACTGGCAG 499
Query 521 ATCTCTTGGAGTTAGCTCGTGTTCCTCCTGCTGTTAATCAGGTCGAATGTCATCCTTCTT 580
||||||||| | | ||||| || ||||| |||||||| || || || ||||| ||||| |
Sbjct 500 ATCTCTTGGCGGTGGCTCGGGTCCCTCCCGCTGTTAACCAAGTGGAGTGTCACCCTTCAT 559
Query 581 GGCGACAAA-C-TAAGCTACAAGAATT-CTGCAAATCCAAAGGGGTTCACCTA--AGTGC 635
||| ||||| | | ||| || | ||| ||||||||| ||||| |||||||| || |
Sbjct 560 GGCAACAAAACGT--GCT-CAGGGATTTCTGCAAATCTAAAGGCGTTCACCTCTCAG-G- 614
Query 636 ATACTCGCCATTAGGTTCTCCAGGGACAACATGGCTGAAGAGCGATGTTTTGAAGAACCC 695
|||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 ATACTCTCCGTTGGGTTCTCCAGGGACAACATGGCTAAAGAGCGATGTTTTGAAGAACCC 674
Query 696 GATACT-GAATA-TGGTTGCGGAAAAACTCGGAAAGAGTCCTGCGCAAGTCGCCCTTCGT 753
|| || | | || |||| || || ||||| |||| |||||| ||||| || || ||
Sbjct 675 TATTCTTGG-TGGTG-TTGCTGAGAAGCTCGGCAAGACTCCTGCACAAGTTGCACTACGC 732
Query 754 TGGGGACTCCAAATGGGTCACAGTGTGCTTCCCAAGAGTACAAATGAAGGA-AGGATCAA 812
||||| |||||||||||||| ||||| ||||| || || ||| |||||| | ||||||||
Sbjct 733 TGGGGTCTCCAAATGGGTCAAAGTGTTCTTCCAAAAAGCACACATGAAG-ACAGGATCAA 791
Query 813 AGAGAACTTTAATGTTTTCGACTGGTCAATACCCGATTACATGTTCGCTAAGTTTGCTGA 872
| |||| ||| | |||||| | ||||| ||||||||| ||||||| | |||||| ||||
Sbjct 792 ACAGAATTTTGACGTTTTCAATTGGTCCATACCCGATGACATGTTATCCAAGTTTTCTGA 851
Query 873 GATTGAACAGGC 884
||||||||||||
Sbjct 852 GATTGAACAGGC 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5