BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37840.1
Length=2631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482789 jgi|Araly1|482789|fgenesh2_kg.4__1849__AT2G37840.1 4163 0.0
Ahg323930 jgi|Araly1|323930|fgenesh1_pm.C_scaffold_5001474 1517 0.0
Ahg356474 jgi|Araly1|356474|fgenesh1_pg.C_scaffold_8000261 472 8e-132
Ahg939269 jgi|Araly1|939269|scaffold_503460.1 161 2e-38
> Ahg482789 jgi|Araly1|482789|fgenesh2_kg.4__1849__AT2G37840.1
Length=2565
Score = 4163 bits (2254), Expect = 0.0
Identities = 2454/2551 (96%), Gaps = 12/2551 (0%)
Strand=Plus/Plus
Query 51 CGAATCC-TTTTCAACCCGACGGGTCGTGAAATTCCCCAAAAGATTCCTCTTTCTCAGCT 109
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 24 CGAATCCATTTTCAACCCGACGGGTCGTGAAATT-CCCAAAAGATTCCTCTTTCTCAGCT 82
Query 110 CAATTTCCAAAAGCTCCGACCTTTACGATCCTCTAGATTCTCGGCGCCGGTTTCTCGGAG 169
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 83 CAATTTCCAAAAGCTCCGACCTTTTCGATCCTCTAGATTCTCGGCGCCGGTTTCTCGGAG 142
Query 170 TAAATAATGGCTCAGTTCACGGGTCGGGTCGTTGGAGACTACTTGGTGGGTCGTCAAATC 229
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AAAACAATGGCTCAGTTCACGGGTCGGGTCGTTGGAGACTACTTGGTGGGTCGTCAAATC 202
Query 230 GGGTCGGGTTCGTTCTCTGTTGTTTGGGAAGCGAGGCACCGCGTTGACGGTACTGAGGTT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 GGGTCGGGTTCGTTCTCTGTTGTTTGGGAAGCGAGGCACCGCGTTGACGGTACTGAGGTT 262
Query 290 GCTATCAAAGAGATCGCCATGGACAGGCTTAACAAGAAGCTGCAGGAAAGTCTCATGTCT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GCTATCAAAGAGATCGCCATGGACAGGCTTAACAAGAAGCTGCAGGAAAGTCTCATGTCT 322
Query 350 GAGATTTTTATCTTGAGGAGGATCAATCATCCTAACATCATCCGTCTGATCGACATGATC 409
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 323 GAGATTTTTATCTTGAGGAGGATCAATCATCCTAACATCATCCGTATGATCGACATGATC 382
Query 410 AAGTCTCCTGGGAAAGTACATTTGGTGTTGGAGTACTGCAAAGGAGGTGACTTGTCTGTG 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 383 AAGTCTCCTGGGAAAGTACATTTGGTGTTGGAGTACTGCAAAGGAGGTGATTTGTCTGTG 442
Query 470 TATGTCCAAAGACATGGGATTGTCCCTGAAGCTACTGCTAAGCATTTCATGCAGCAGTTA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TATGTCCAAAGACATGGGATTGTCCCTGAAGCTACTGCTAAGCATTTCATGCAGCAGTTA 502
Query 530 GCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTCACCGAGATTTAAAGCCTCAG 589
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 503 GCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTCACCGAGATTTGAAGCCTCAG 562
Query 590 AATCTTCTTCTATCCACAAATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGATTT 649
|||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 563 AATCTTCTTCTATCCACAGATGAAAACGATGCAGATCTGGAGATTGCTGATTTTGGATTT 622
Query 650 GCAAGATCGTTGCAACCTAGGGGGCTCGCAGAGACTTTATGTGGTTCACCATTGTATATG 709
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 623 GCAAGATCGTTGCAACCTAGGGGGCTTGCAGAGACTTTATGCGGTTCACCATTGTATATG 682
Query 710 GCCCCAGAGATCATGCAACTCCAGAAGTATGATGCAAAGGCAGATCTCTGGAGTGTTGGT 769
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 683 GCCCCAGAGATCATGCAACTTCAGAAGTATGATGCAAAGGCAGATCTCTGGAGTGTTGGT 742
Query 770 GCTATTTTATTTCAACTTGTGACAGGCAGAACCCCTTTTACAGGAAACAGCCAAATTCAG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GCTATTTTATTTCAACTTGTGACAGGCAGAACCCCTTTTACAGGAAACAGCCAAATTCAG 802
Query 830 TTGCTCCAAAACATTATAAGATCAACCGAATTACATTTTCCAGGGGACTGTAGAGATTTA 889
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 803 TTGCTCCAAAACATTATAAGATCAACCGGATTACATTTTCCAGGGGACTGCAGAGATTTA 862
Query 890 AGCTTGGACTGCATAGACCTGTGTCAGAAGTTACTGCGCCGTAATCCAGTGGAACGTTTG 949
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AGTTTGGACTGTATAGATCTGTGTCAGAAGTTACTGCGCCGTAATCCAGTGGAACGTTTG 922
Query 950 ACATTTGAAGAGTTCTTTAATCACCCTTTCCTTTCGGACAGGCAGTCATATGATTTCTCC 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ACATTTGAAGAGTTCTTTAATCACCCTTTCCTTTCGGACAGGCAGTCATATGATTTCTCA 982
Query 1010 AGGAGTAGATTGGGGTTAAGAACAATGGACGGTTTTCTTTCGTCTGGAAGCAGTCCCTCG 1069
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 AGGAGTAGATTGGGCTTAAGAACAATGGACGGTTTTCTTTCGTCTGGGAGCAGTCCCTCG 1042
Query 1070 AGAAACATGGAAGAAAGTTCTCAAGAAGACTGTTTGCCGTTCCTTCTAGATGATGATTCT 1129
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1043 AGAAACATGGAAGAAAGTTCTCAAGAAGACTGTTTGCCATTCCTTCTAGATGATGATTCT 1102
Query 1130 AGTGGACCTGAGGGGAGCCCTTCATATTTAAAAAAGACATCCTCAATGAAGTCGTCCTCT 1189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1103 AGTGGACCTGAGGGGAGCCCTTCATATTTGAAAAAGACATCCTCAATGAAGTCGTCCTCT 1162
Query 1190 GGAATTAAAGTCGATACGAGAATTGAGAGGAAGGAGGTGGAATCTAGTCCTTTAAAACAT 1249
||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 1163 GGATTTAAAGTCGATACCAGAATTGAGAGAAAGGAGGCGGAATCTAGTCCTTTAAAATAT 1222
Query 1250 ACAGAACTTACTTCTGGATATAGTAGTTTCAACCAAAAAGTGGAAAACGATAGATTTAGA 1309
|||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1223 ACAGAACTTACTTCTGAATATAGTAGTGTCGACCAAAAAGTGGAAAACAATAGATTTAGG 1282
Query 1310 TTTGAAACTCAAATAAATTCAGATAGGAGAAACCGCAGGGAACCGACAGGATTGACTGAT 1369
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1283 TTTGAAACTCAAATAAATTCGGATAGGAGAAACCGCAGGGAACCAACAGGATTGACTGAT 1342
Query 1370 TCTAGATCACTTATTGCTCCAGGAAGAGTAGATGATTCTCAAGACTCCATGGATCAAGAC 1429
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1343 TCCAGATCACTTATTGCTCCAGGAGGAGTAGATGATTCTCAAGACTCCATGGATCAAGAT 1402
Query 1430 TTCGTTCTCGTATCTGGACCACCAGTAGATATGCCATCATCTTCATCAAGTTCTTCGAAG 1489
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1403 TTCGTTCTCGTATCTGGACCACCAGTGGATATGCCATCATCTTCATCAAGTTCTTCGAAG 1462
Query 1490 CCTTATAATTTTCCATTCAAGTCTCAGTCTCCTCCTGTAGAGTTATTCAACAGAAGCATA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 CCTTATAATTTTCCATTCAAGTCTCAGTCTCCTCCTGTAGAGTTATTCAACAGAAGCATA 1522
Query 1550 AGTTCAACGGCTCCCATGCCAATAATTGGTGCTACTAGCAACAGCATTGGTCAGTTTGGG 1609
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1523 AGTTCAACGGCTCCCATGCCAATAATTGGTGCTACTGGCAACAGCATTGGTCAGTTTGGG 1582
Query 1610 AGCCTTGACAGTCAGTATTCTGCCCCGAGCACTTCTCATGGGTCTCTGGATCTTGGTGAT 1669
||||| ||||||||| | ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1583 AGCCTGGACAGTCAGAACTCTGCCCCGAGCACTTCTCATGGGTCTCTAGATCTTGGGGAT 1642
Query 1670 GCTTTTGAACAGCCATCAACTCACAGCCTGACAAGAATCAGGTCTCTGAGAAAATATGCA 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1643 GCTTTTGAACAGCCATCAACTCACAGCCTGACAAGAATCAGGTCTCTGAGAAAATGTGCA 1702
Query 1730 GCAACAATTGCAGAACTAGTTTATGAAAGGATTGAATCTGACAAACATCTAGAAGCTTTC 1789
||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1703 GCAACGATTGCAGAACTAGTTCATGAAAGGATTGAGTCTGACAAACATCTAGAAGCTTTC 1762
Query 1790 TCGATCCAATTGGCGATTCTGGCAATTTGGAAACAGGCACTGCACATATGTCATACTCAG 1849
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1763 TCGATCCAATTGGCGATTCTGGCAATTTGGAAGCAGGCACTGCACATATGTCATACTCAG 1822
Query 1850 GCAATTTCAGGTTTGGAAGGAAGCCCAAGCCAAGACATTAACAAACTAAGAAGTAGCAGC 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 GCAATTTCAGGTTTGGAAGGAAGCCCAAGCCAAGACATTAACAAACTAAGAAGTAGCAGC 1882
Query 1910 CTGAAACACGATACTCACAGTTCTAATAAAGTCACTGATCTCAGCCATGATGGATCGGAG 1969
|||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct 1883 CTGAAACACGATACCCACAATTCTGATAAAGTCACTGATCTCAGCCATGATGGATCAGAG 1942
Query 1970 GAGATATCCTCTCAGATTCAGAGGCAATTTATACAGGAGATTGAGCTTGCTGAAGAACTT 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 GAGATATCCTCTCAGATTCAGAGGCAATTTATACAGGAGATTGAGCTTGCTGAAGAACTT 2002
Query 2030 GCCAAGAGTATTGAACCTGGAAATACAAAAATGCCAGATGCAATGGAGACGATATTTGAA 2089
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2003 GCCAAGAGTATTGAACCTGGAAATATAAAAATGCCAGATGCAATGGAGACGATATTTGAA 2062
Query 2090 GCAGCACTTGATCTTGGAAAACTTGGAGGAGTTAAGGAGGTTATGGGAGATACAGAGAAC 2149
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 2063 GCAGCGCTTGATCTTGGAAAACTTGGGGGAGTTAAGGAGGTTATGGGAGATATAGAGAAC 2122
Query 2150 GCCGGAAACCAATATTCGAAAGCAGTGCGTTTGCTGGTATTCCTTTTAGTAGAAGCACCA 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 GCCGGAAACCAATATTCGAAAGCAGTGCGTTTGCTGGTATTCCTTTTAGTAGAAGCACCA 2182
Query 2210 ATGCTGATTCTGAATCCGCCACTGTCTCTCACAAACTCAGTCAGGTATCGTCTCAGGACA 2269
| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||| | |||
Sbjct 2183 ACGCTGATTATGAATCCGCCATTGTCTCTCACAAACTCAGTTAGGTATCGTCTCCGAACA 2242
Query 2270 TATATTGATTTCCTCAGCAGAAGATTAAAACATCTGCAGTCACATAGAAGAAGTTCAGCT 2329
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 2243 TATATCGATTTCCTCAGCAGAAGATTAAAACATCTCCAATCACATAGAAGAAGTTCAGGT 2302
Query 2330 GGTCAGATGCAAGGATCATCGTTAGCTATGATGAACAGACAATCATAAATCCATTCACTT 2389
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2303 GGTCAGATGCAAGGATCATCGTTAACTATGATGAACAGACAATCATAAACCCATTCACTC 2362
Query 2390 GGGTTGGGTTCTCTTGTTTCTTGTGTTC-TTTTATGaaaaaaaaaaaaaaatctaaaaga 2448
|| |||| |||||||||||| ||||||| |||| | ||||||||| |||||||||
Sbjct 2363 GGATTGGCTTCTCTTGTTTCGTGTGTTCCTTTT-T-AAAAAAAAAT-----TCTAAAAGA 2415
Query 2449 gaaaaaTGTATATGTTTTTGTACAGCAACA-TCATATATTCTTATTCTTTTGGGGTTAAT 2507
||||||| ||| |||||| ||||||||| | ||||||||||||||||||||||| |||||
Sbjct 2416 GAAAAATATATTTGTTTT-GTACAGCAAAAATCATATATTCTTATTCTTTTGGGATTAAT 2474
Query 2508 CTGGAGGGACGTTGGGGAAATGATCTGTGTGATGGATGTTGTAACTTGTAACATTTTCTT 2567
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2475 CTGGAGGGACTTTGGGGTTATGATGTGTGTGATGGATGTTGTAACTTGTAACATTTTCTT 2534
Query 2568 GTTCTATTTTGATCTTAATCCTATGTTTTTT 2598
|||||||||||||| ||||||| || |||||
Sbjct 2535 GTTCTATTTTGATCCTAATCCTTTGGTTTTT 2565
> Ahg323930 jgi|Araly1|323930|fgenesh1_pm.C_scaffold_5001474
Length=2136
Score = 1517 bits (821), Expect = 0.0
Identities = 1430/1717 (83%), Gaps = 70/1717 (4%)
Strand=Plus/Plus
Query 215 GTGGGTCGTCAAATCGGGTCGGGTTCGTTCTCTGTTGTTTGGGAAGCGAGGCACCGCGTT 274
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||| | |||
Sbjct 61 GTGGGTCGACAAATCGGGTCGGGTTCGTTCTCGGTTGTTTGGGAAGGGAGGCATCTTGTT 120
Query 275 GACGGTACTGAGGTTGCTATCAAAGAGATCGCCATGGAC-AGGCTTAACAAGAAGCTGCA 333
| || || | ||||||||||| |||||||| |||| | | ||||| |||||| ||||
Sbjct 121 CATGGCACCGTCGTTGCTATCAAGGAGATCGCTATGG-CTCGACTTAATAAGAAGTTGCA 179
Query 334 GGAAAGTCTCATGTCTGAGATTTTTATCTTGAGGAGGATCAATCATCCTAACATCATCCG 393
|| ||||||||||| |||||| | ||||| |||| ||| ||||||||||||||||| ||
Sbjct 180 AGAGAGTCTCATGTCGGAGATTATCATCTTAAGGAAGATTAATCATCCTAACATCATTCG 239
Query 394 TC-TGATCGACATGATCAAGTCTCCTGGGAAAG-TACATTTGGTGTTGGAGTACTGCAAA 451
| | |||||||||||| || |||||||| ||| || |||||||||||||||||||||||
Sbjct 240 -CTTTATCGACATGATCGAGGCTCCTGGG-AAGATAAATTTGGTGTTGGAGTACTGCAAA 297
Query 452 GGAGGTGACT-TGTCTGTGTATGTCCAAAGACATGGGATTGTCCCTGAAGCTACTGCTAA 510
|| ||||| | ||||| ||||| | || || ||||| | ||| |||||||||||||||||
Sbjct 298 GGGGGTGA-TCTGTCTATGTATATTCATAGTCATGGAAGTGTTCCTGAAGCTACTGCTAA 356
Query 511 GCATTTCATGCAGCAGTTAGCGGCCGGCTTACAAGTTCTTCGTGACAATAATATTATTCA 570
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 357 GCATTTTATGCAGCAGTTAGCGGCTGGCTTACAAGTTCTTCGTGAGAATAATATTATTCA 416
Query 571 CCGAGATTTAAAGCCTCAGAATCTTCTTCTATCCACAAATGAAAATGATGCAGATCTGAA 630
||| ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 417 CCGCGATTTAAAGCCTCAGAATCTTCTTCTATCCACAGATGATAATGATGCAGCTCTGAA 476
Query 631 GATTGCTGATTTTGGATTTGCAAGATCGTTGCAACCTAGGGGGCTCGCAGAGACTTTATG 690
|||||| |||||||||||||||||||||||||| |||||||| | ||||| ||||||||
Sbjct 477 GATTGCCGATTTTGGATTTGCAAGATCGTTGCAGCCTAGGGGTTTGGCAGAAACTTTATG 536
Query 691 TGGTTCACCATTGTATATGGCCCCAGAGATCATGCAACTCCAGAAGTATGATGCAAAGGC 750
|||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 537 TGGTTCACCACTGTATATGGCCCCAGAGATTATGCAGCTCCAAAAATATGATGCAAAGGC 596
Query 751 AGATCTCTGGAGTGTTGGTGCTATTTTATTTCAACTTGTGACAGGCAGAACCCCTTTTAC 810
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 AGATCTCTGGAGTGTTGGTGCTATATTATTTCAACTTGTGACAGGCAGAACCCCTTTTAC 656
Query 811 AGGAAACAGCCAAATTCAGTTGCTCCAAAACATTATAAGATCAACCGAATTACATTTTCC 870
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 657 AGGAAACAGCCAAATTCAGTTGCTCCAGAACATAATAAGATCAACTGAATTACATTTTCC 716
Query 871 AGGGGACTGTAGAGATTTAAGCTTGGACT-GCATAGACCTGTGTCAGAAGTTACTGCGCC 929
|| |||||||||||||| || | | | | | ||| || || |||||| ||||||| |
Sbjct 717 AGCCGACTGTAGAGATTTGAG-TACCAATTGTAGAGATCTATGCCAGAAGCTACTGCGTC 775
Query 930 GTAATCCAGTGGAACGTTTGACATTTGAAGAGTTCTTTAATCACCCTTTCCTTTCGGACA 989
|||||||||||||||||||||| ||||||||||| ||| |||| ||||| ||||| ||||
Sbjct 776 GTAATCCAGTGGAACGTTTGACGTTTGAAGAGTTTTTTCATCATCCTTTTCTTTCAGACA 835
Query 990 GGCAGTCATATGATTTCTCCAGGAGTAGATTGGGGTTAA-GAACAATG-GACGGTTTTCT 1047
|| |||||||||||| | ||||||||||| | || | |||| ||| | || |||||
Sbjct 836 AACAATCATATGATTTCACAAGGAGTAGATTAGA-TTCACGAACGATGAG-CGATTTTCA 893
Query 1048 TTCGTCTGGAAGCAGTCCCTCGAGAAACATGGAAGAAA-GTTCTCAAGAAGACTGTTTGC 1106
||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||||||
Sbjct 894 TTCATCTGGAAGCAGTCCCTCAAGAAATATGGAAGAAATGT-CTCAAGAAGACTGTTTGC 952
Query 1107 CGTTCCTTCTAGATGATGATTCTAGTGGACCTGAGGGGAGCCCTTCATATTTAAAAAAGA 1166
| || || |||||||||||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 953 CATTTTTTTTAGATGATGATTCTAGTGGACCTGAGGGAAGCCCTTCATATTTTAAACATA 1012
Query 1167 CATCCTCAATGAAGTCGTCCT-CTGGAATTAAAGTCGATACGAGAATTGAGAGGAAGGAG 1225
| ||| |||| ||||| || | | ||| |||| || || | |||| |||||| ||
Sbjct 1013 CTTCCCCAATAAAGTCATCTTAC-GGATTTAACGTTGA-A--AGAA--GAGAGGCAGC-- 1064
Query 1226 GTGGAATCTAGTCCTTTAAAACATACA-G-AACTTACTTCTGGATATAGTAGTTTCAACC 1283
| ||||||||||| ||| | ||| | |||||||||| ||||||||||| ||| |
Sbjct 1065 -T----TCTAGTCCTTTGAAA-A-ACATGGAACTTACTTCCGGATATAGTAGAGTCAGTC 1117
Query 1284 AAAAAGTGGAAAACGATAGATTT-AGATTTGAAACTCAAATAAATT--CAGATAGGAGAA 1340
| | || |||| | ||| ||| | | ||| || | | || ||| ||||||| | ||
Sbjct 1118 ATAGAGCAGAAACCAATA-ATTCCA-AGTTGGAAGGCCA-TAGATTATCAGATAG-A-AA 1172
Query 1341 ACCGCAGGGAA-CCGACAGGATTGACTGATTCTAGATCACTTATTGCTCCAGGAAGAGTA 1399
|| | || ||| || | ||| | ||||| |||||||||| | ||| ||||||||||
Sbjct 1173 -CCA-ATTCAAACCGTCAAGCTTGCCGGATTCCAGATCACTTAGTACTCAAGGAAGAGTA 1230
Query 1400 GATGATTCTCAAGACTCCATGGATCAAGACT-TCGTTCTCG-TATCTGGACCACCAGTAG 1457
| ||||||| |||||| ||||||||||||| | ||||| | ||||||||||||| || |
Sbjct 1231 GGGGATTCTCCAGACTCAATGGATCAAGACTAT-GTTCT-GATATCTGGACCACCGGTTG 1288
Query 1458 ATATGCCATCATCTTCATCAAGTTCTTCGAAGCCTTAT-AATTTTCCATTCAAGTCTCAG 1516
|||| ||||||||||||| ||||| ||||||||| | |||| |||||||| || ||
Sbjct 1289 ATATACCATCATCTTCATTTGGTTCTCCGAAGCCTT-TCAATTACCCATTCAAATCACAT 1347
Query 1517 TCTCCTCCTGTAGAGTT-ATTCAACAGAA--GCA--TAAGTTCAACGGCTCCCATGCCAA 1571
||||||||||||||||| | ||| |||| | | || || ||||||||| |||| ||
Sbjct 1348 TCTCCTCCTGTAGAGTTCAG-CAAGAGAAATGTAACTACTTT-AACGGCTCCTATGCAAA 1405
Query 1572 TAATTGGTGCTACTAGCAACAGCATTGGTC-AGTTTGGGAGCCTTG-ACAGTCAGTATTC 1629
|| |||||| ||| |||||| |||| ||| | ||||| ||| ||| | |||||| |||
Sbjct 1406 TAGCTGGTGCCACTGGCAACAACATTAGTCGA-TTTGGAAGC-TTGGAGAGTCAGAATTA 1463
Query 1630 TGCCCCGAGCACTTCTCATGGGTCTCTGGATCTTGGTG-ATGCTTTTGAACAGCCATCAA 1688
| |||| | ||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 1464 TATCCCGGGTACTTCTCATGGGTCTCTAGATCTTG-TGGATGCTTTTGAACAGCCATCAA 1522
Query 1689 CTCACAGCCTGACAAGAAT-CAGGTCTCTGAGAAAA-TATGCAGCAACAATTGCAGAACT 1746
|| ||||| |||||||||| | ||||| || |||| | ||||||| |||| |||||| |
Sbjct 1523 CTAACAGCTTGACAAGAATTC-GGTCTTTGC-AAAAGTGTGCAGCAGCAATAGCAGAATT 1580
Query 1747 AGTTTATGAAAG-GATTGAATCTGACAAACATCTAGAAGCTTTCTCGATCCAATTGGCGA 1805
||| ||||||| | | ||| || || ||| |||||||||||||||||||| ||| ||
Sbjct 1581 GGTTCATGAAAGAGGT-GAAAATGGTAAGCATTTAGAAGCTTTCTCGATCCAACTGGTGA 1639
Query 1806 TTCTGGCAATTTGGAAACAGGCACTGCACATATGTCATACTCAGGCAATTTCAGGTTTGG 1865
|||| ||||||||||| || ||||||||||| ||||||||||||||| | || ||| | |
Sbjct 1640 TTCTTGCAATTTGGAATCAAGCACTGCACATCTGTCATACTCAGGCAGTCTCGGGTATAG 1699
Query 1866 AAGGAAGCCCAAGCCAAGACATTAACAAACTAAGAAG 1902
||||||||| ||||||||||||||| | |||||||
Sbjct 1700 AAGGAAGCCTGCGCCAAGACATTAACAGAGTAAGAAG 1736
> Ahg356474 jgi|Araly1|356474|fgenesh1_pg.C_scaffold_8000261
Length=972
Score = 472 bits (255), Expect = 8e-132
Identities = 374/428 (87%), Gaps = 22/428 (5%)
Strand=Plus/Plus
Query 1612 CCTTGACAGTCAGTATTCTGCCCCGAGCACTTCTCATGGGTCTCTGGATCTTGGTGATGC 1671
||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 267 CCTGGACAGTCAGAACTCTGCTCCGAGCACTTCTCATGGGTCGCTGGATCTTGGGGATGC 326
Query 1672 TTTTGAACAGCCATCAACTCACAGCCTGACAAGAATCAGGTCTCTGAGAAAA-TATGCAG 1730
||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| | |||||
Sbjct 327 TTTTGAACAGCCATCAACTAACAGCTTGACAAGAATCAGTTCTCTGA-AAAAGTGTGCAG 385
Query 1731 CAACAATTGCAGAACTAGTTTATGAAAGGATTGAATCTGACAAACATCTAGAAGCTTTCT 1790
|||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 386 CAACAATTGCAGAATTAGTTCATGAAAGGATAAAATCTGACAAACACCTAGAAGCTTTCT 445
Query 1791 CGATCCAATTGGCGATTCTGGCAATTTGGAAACAGGCACTGCACATATGTCATACTCAGG 1850
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 446 CGATCCAACTGGCGATTCTGGCTATTTGGAAACAGGCACTGCACATATGCCATACTCAGG 505
Query 1851 CAATTTCAGGTTTGGAAGGAAGCCCAAGC-CAAGACATTAACAAACT-A-A-GAAGTAGC 1906
|||| |||||||||||||||||||||| | ||||||||||||||||| | | ||||||||
Sbjct 506 CAATCTCAGGTTTGGAAGGAAGCCCAA-CTCAAGACATTAACAAACTAAGAGGAAGTAGC 564
Query 1907 AGCCTGAAACACGATACTCACAGTTCTAATAAAGTCACTGATCTCAGCCATGATGGATCG 1966
||| |||||||| || | | | |||||||| |||||||||||||||
Sbjct 565 TGCCGGAAACACG--------AG--C--GT--A-TCACTGATATCAGCCATGATGGATTA 609
Query 1967 GAGGAGATATCCTCTCAGATTCAGAGGCAATTTATACAGGAGATTGAGCTTGCTGAAGAA 2026
||||||||||||||||||||||||||||| ||||| | ||||| |||| || ||||||||
Sbjct 610 GAGGAGATATCCTCTCAGATTCAGAGGCAGTTTATCCGGGAGACTGAGGTTTCTGAAGAA 669
Query 2027 CTTGCCAA 2034
||| ||||
Sbjct 670 CTTTCCAA 677
Score = 335 bits (181), Expect = 1e-90
Identities = 216/233 (93%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 2051 AATACAAAAATGCCAGATGCAATGGAGACGATATTTGAAGCAGCACTTGATCTTGGAAAA 2110
||||||| ||||| ||||| ||||||||| ||||||||||||| || ||||||||||||
Sbjct 739 AATACAATGATGCCTGATGCTATGGAGACGCTATTTGAAGCAGCCCTCGATCTTGGAAAA 798
Query 2111 CTTGGAGGAGTTAAGGAGGTTATGGGAGATACAGAGAACGCCGGAAACCAATATTCGAAA 2170
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 799 CTTGGGGGAGTTAAGGAGGTTATGGGAGATATAGAGAACGCCGGAAACCAATATTCGAAA 858
Query 2171 GCAGTGCGTTTGCTGGTATTCCTTTTAGTAGAAGCACCAATGCTGATTCTGAATCCGCCA 2230
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 859 GCGGTGCGTTTGCTGGTATTCCTTCTAGTAGAAGCACCAATGCTGATTCTGAATCCGCCA 918
Query 2231 CTGTCTCTCACAAACTCAGTCAGGTATCGTCTCAGGACATATATTGATTTCCT 2283
|||||||||||||||||| ||||||||| ||||| |||||||| ||| ||||
Sbjct 919 TTGTCTCTCACAAACTCAGACAGGTATCG-CTCAGAACATATATCGATATCCT 970
Score = 246 bits (133), Expect = 5e-64
Identities = 153/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 588 AGAATCTTCTTCTATCCACAAATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGAT 647
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 104 AGAATCTTCTTCTATCCACAGATGAAAATGATGCAGATCTGAAGATTGCTGATTTTGGAT 163
Query 648 TTGCAAGATCGTTGCAACCTAGGGGGCTCGCAGAGACTTTATGTGGTTCACCATTGTATA 707
||||||| |||| ||||||||||||||| ||||| || |||| |||||||||||||||||
Sbjct 164 TTGCAAGGTCGTCGCAACCTAGGGGGCTTGCAGAAACATTATTTGGTTCACCATTGTATA 223
Query 708 TGGCCCCAGAGATCATGCAACTCCAGAAGTATGATGCAAAGGC 750
||||||||||||| |||||||| || |||||||||||||||||
Sbjct 224 TGGCCCCAGAGATTATGCAACTTCACAAGTATGATGCAAAGGC 266
> Ahg939269 jgi|Araly1|939269|scaffold_503460.1
Length=1922
Score = 161 bits (87), Expect = 2e-38
Identities = 294/390 (75%), Gaps = 30/390 (8%)
Strand=Plus/Plus
Query 434 GTGTTGGAGTACTGCAAAGGAGGTGA-CTTGTCTGTGTATGTCCAA-AGACATGGGATTG 491
||||||||||| || | |||||||| |||| ||| |||| | ||| | ||||||| |
Sbjct 273 GTGTTGGAGTATTGTAGTGGAGGTGATCTTG-CTGGGTATAT-CAATCGCCATGGGAAAG 330
Query 492 TCCCTGAAGCTACTGCTAAGCATTTCATGCA-GCAGTTAGCGGCCGGCTTACAAGTTCTT 550
| ||||||||| |||||| ||||| ||| | ||| || || || |||||||| |||
Sbjct 331 TACCTGAAGCTGTTGCTAAACATTTTATG-AGGCAATTGGCTTTAGGGTTACAAGTACTT 389
Query 551 CGTGACAATAATATTATTCACCGAGATTTAAAGCCTCAGAATCTT-CTTCTATCCACAAA 609
| || || || ||||||||||||||||||||||||||||| || ||| |||| | ||
Sbjct 390 CAAGAGAAGCATTTTATTCACCGAGATTTAAAGCCTCAGAAT-TTACTTTTATCGTCCAA 448
Query 610 TGAAAATGA-TGCAGAT-CTGAAGATTGCTGATTTTGGATTTGCAAGATCGT-TG-CAAC 665
||| | | | || | || ||||| | |||||||| |||||||| || | | || |
Sbjct 449 GGAAGTT-ACTCCAT-TGCTAAAGATAGGGGATTTTGGGTTTGCAAGGTC-TCTAACA-C 504
Query 666 CTAGGGG-GC-TCGCAGAGAC-TTTATGTGGTTCACCATTGTATATGGCCCCAGAGATCA 722
| || | || | || || || ||| || ||||| |||||||||||||| ||||| || |
Sbjct 505 C--GGAGAGCATGGCGGAAACATTT-TGCGGTTCTCCATTGTATATGGCTCCAGAAATTA 561
Query 723 TGC--AACTCCAGAAGTATGATGCAAAGGCAGATCTC-TGGAGTGTTGGTGCTATTTTAT 779
| | ||| | | ||||||||||| ||||| || || ||||||| ||||| ||||| |
Sbjct 562 TCCGGAAC-CAA-AAGTATGATGCTAAGGCTGA-CTTATGGAGTGCCGGTGCGATTTTGT 618
Query 780 TTCAACTTGTGACAGGCAGAACC-CCTTTT 808
|||||||||| || || | |||| ||||||
Sbjct 619 TTCAACTTGTTACTGGGA-AACCACCTTTT 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99225088225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5