BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37860.3
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482793 jgi|Araly1|482793|fgenesh2_kg.4__1853__AT2G37860.3 2338 0.0
Ahg356475 jgi|Araly1|356475|fgenesh1_pg.C_scaffold_8000262 472 5e-132
Ahg326573 jgi|Araly1|326573|fgenesh1_pm.C_scaffold_6001793 333 2e-90
> Ahg482793 jgi|Araly1|482793|fgenesh2_kg.4__1853__AT2G37860.3
Length=1523
Score = 2338 bits (1266), Expect = 0.0
Identities = 1451/1537 (94%), Gaps = 25/1537 (2%)
Strand=Plus/Plus
Query 4 GGCCCTAATCACTCTTGCAGTCACCACTGTCGCCGTCCGTCTCTCCTTCTCCTTC-TTAG 62
|||||||||||||||||||||||||||||| | ||||||||| |||||||||| || |
Sbjct 1 GGCCCTAATCACTCTTGCAGTCACCACTGT---C-TCCGTCTCTTCTTCTCCTTCGTT-G 55
Query 63 GGACCATTCCTCCTCTTTCAGACCAGATTCTAGAAGAGGAAAAATGGCAGGATGTGCAAT 122
||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||
Sbjct 56 GGACCATTCCTCCTCTTTCAGGCCAGATTCAAGAAGAGG-ACAATGGCAGGATGTGCAAT 114
Query 123 GAATCTTCAGTTCTCAAGTGTTGTGAAAGTGAGAAACGAGATCTCTTCTTTTGGGATTTG 182
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 GAATTTTCAGTTCTCGAGTGTTGTGAAAGTGAGAAACGAGATCTCTTCTTTAAGGATTTG 174
Query 183 TAATCGAGACTTTGTATTTAGAGATTTAGCCAAGGCAATGAAAGTGCCTGTTTTGCGGAT 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 TAATCGAGACTTTGTATTTAGAGATTTGGCCAAGGCAATGAAAGTGCCTGTTTTGCGGAT 234
Query 243 TAGAGGTGGTTCAGGTAGGCAAAGGTCGAGGCTTTTCG-TGGTTAATATGTCTCAATCTC 301
|||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 235 TAGAGGTGCTTCAGGAAGGCAAAGGTCGAGGCTTTT-GATGGTTAATATGTCTCAATCTC 293
Query 302 CCATTGAGCCACAATCTGGTGGTTTTGCGGCTACTGAACAAAT-TAAAGGAGAAGGTGAT 360
| |||| || ||||||||| | | | | | ||| || | ||| |||||||||||||||
Sbjct 294 CTGTTGAACCGCAATCTGGT-G-TAT-CAGTTACCGAGC-AATCGAAAGGAGAAGGTGAT 349
Query 361 AATAGTATCTTAGGGAAAGACAATGTTAGAAACTTAGGAACTGATCAGCTTGAGAATTTG 420
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 350 GATAGTATCTTAGGGAAAGACAATGTTAGAAACTTGGGAACTGATCAGCTTGAGAATTTG 409
Query 421 GAT-ATTGATGGTAATGTTGGAGATGGTTTTAATGGTAGTGATGGTAATGGGGGTGGTGG 479
||| | |||||||||||| || ||||| |||||||||| ||||||||||||||| ||||
Sbjct 410 GATCA-TGATGGTAATGTAGGGGATGGCTTTAATGGTAATGATGGTAATGGGGGCAGTGG 468
Query 480 AGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGGTGAAGACTACGAAGAAAAAGAGTT 539
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 469 AGGAGGTGGAAATGGAGGAGAAGGTGATGGCGAAGGCGAAGATTACGAAGAAAAAGAGTT 528
Query 540 TGGACCGATATTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGCTAGAGGAGCTACTCT 599
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 529 TGGACCGATTTTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGCTCGAGGAGCTACTCT 588
Query 600 TCCATCTGATATGTTGGAAGCTGCTAAGAAC-TATGGGATCCGCAAAGTGCTTCTCCTTA 658
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 589 TCCATCTGATATGTTGGAAGCTGCTAAG-ACTTATGGGATCCGCAAAGTGCTTCTCCTTA 647
Query 659 GGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGCTATAAGATCATGGGCTA 718
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 648 GGTACTTGGATTTGCAGAGCTCAGCTGGGCTGCTTGGGTTTGCTATAAGATCATGGGCTA 707
Query 719 TGCTTCGTAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGGCTGAGATAG 778
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGCTTCGAAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGGCTGAGATAG 767
Query 779 TCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGGGAAAGATTTCTGGG 838
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 768 TCATTGATTCTTGTTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGGGAAGGATTTCTGGG 827
Query 839 CGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAACTGTGGTTAACATTGCTCTGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAACTGTGGTTAACATTGCTCTGG 887
Query 899 TCGGTATGTTGGCGCCTTATGTTCGTTTTGGACAACCTTCCGCATCACCTGGCTTCTTAG 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 888 TCGGTATGTTGGCGCCTTATGTTCGTTTTGGACAACCATCCGCATCACCTGGCTTCTTAG 947
Query 959 GACGCATGGTTTTTGCATATAATGCGCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCAG 1018
|||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 948 GACGAATGGTTTTTGCTTATAATGCGCTTCCTAGCAGCGTGTTTGAAGCTGAAAGGCCAG 1007
Query 1019 GATGTAGATTTTCCGCTCAACAGAGACTTGCTACATACTTCTACAAGGGTATAATGTATG 1078
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATGTCGATTTTCCGCTCAACAGAGACTTGCTACATACTTCTACAAGGGTATAATGTATG 1067
Query 1079 GTGCAGTTGGATTTGGATGTGGCATTGTAGGTCAAGGCATTGCAAATCTTATCATGACTG 1138
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1068 GTGCAGTTGGATTTGGATGTGGCATCGTAGGTCAAGGCATCGCAAATCTTATCATGACTG 1127
Query 1139 CCAAACGAAACATAAATAAATCAGAAGAGAACATCCCGGTACCACCGCTAATCAAGAGTG 1198
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CTAAACGAAACATAAATAAATCAGAAGAGAACATCCCGGTACCACCGCTAATCAAGAGTG 1187
Query 1199 CAGCTCTCTGGGGTGTATTCTTGAGTGTTTCTTCGAATACTCGTTATCAAATCATCAATG 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1188 CAGCTCTCTGGGGTGTATTCTTGAGTGTTTCTTCGAATACTCGTTATCAGATCATCAATG 1247
Query 1259 GTCTAGAAAGAGTGGTCGAAGCATCACCTTTTGCCAAGAAATTCCCTCCGGCGGCTATGG 1318
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1248 GTCTAGAGAGAGTGGTCGAAGCATCACCTTTCGCCAAGAAATTGCCTCCGGCGGCTATGG 1307
Query 1319 CCTTCACAGTTGGTGTACGGTTGGCCAATAACATCTACGGCGGAATGCAGTTTGTGGATT 1378
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1308 CCTTCACAGTTGGTGTACGGTTGGCCAATAACATCTACGGTGGTATGCAGTTTGTGGATT 1367
Query 1379 GGGCAAGATTGAGCGGTTGTCAGTGAAAACAACCAAAAACTCTTTTTTGTGTGTCTTATT 1438
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1368 GGGCAAGATTGAGCGGTTGTCAGTGAAAACAACCAAAA-CTCTTCTTTGTGTGTCTTATT 1426
Query 1439 TGATGAAACCATATGTTGTTGTAGCCTACTCATTTCTATCTGTTTTACTACATTTCCGTT 1498
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1427 TGATGAAACCATATAATGTTGTAGCCTACTCATTTCGATCTGTTTTACTACGTTTCCGTT 1486
Query 1499 GTTA-TATC-TA---A-TAATAAGAATTTTCAGCTCG 1529
|||| ||| || | ||||||||| ||||||||||
Sbjct 1487 GTTACTATAATATCCAATAATAAGAAATTTCAGCTCG 1523
> Ahg356475 jgi|Araly1|356475|fgenesh1_pg.C_scaffold_8000262
Length=648
Score = 472 bits (255), Expect = 5e-132
Identities = 323/355 (91%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 472 GGTGGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGGTGAAGACTACGAAGAA 531
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 286 GGTGGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAG---AAGACTATGAAGAA 342
Query 532 AAAGAGTTTGGACCGA-TATTGAAATTTGAAGAGGTCATGA-AGGAGACTGAAGCTAGAG 589
||||||| |||||| | | |||||||||||||||||||||| || |||| |||||| | |
Sbjct 343 AAAGAGTCTGGACC-ACTTTTGAAATTTGAAGAGGTCATGAGAG-AGACGGAAGCTCGTG 400
Query 590 GAGCTACTCTTCCATCTGATATGTTGGAAGCTGCTAAGAACTATGGGATCCGCAAAGTGC 649
|||| || ||||||||||||||||| || |||||||||| || |||||| |||||| |||
Sbjct 401 GAGCCACGCTTCCATCTGATATGTTAGAGGCTGCTAAGACCTTTGGGATACGCAAATTGC 460
Query 650 TTCTCCTTAGGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGCTATAAGAT 709
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 461 TTCTCCTTAGGTACTTGGATTTGCAGAGCTCAGCTGGGCTGCTTGGCTTTGCTATAAGAT 520
Query 710 CATGGGCTATGCTTCGTAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGG 769
||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CATGGTCTATGCTTCGCAGCAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGA 580
Query 770 CTGAGATAGTCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGG 824
|||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 581 CTGAGATAGTGATTGATTCGTGTTGTGCCACTGTCGCTGAAGTTCAAAAGAGAGG 635
Score = 276 bits (149), Expect = 4e-73
Identities = 218/250 (87%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 106 ATGGCAGGATGTGCAATGAATCTTCAGTTCTCAAGTGTTGTGAAAGTGAGAAACGAGATC 165
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGATGTGCAATGAATTTTCAGTTTTCAAGTGTTGTGAAAGTGAGAAACGAGATA 60
Query 166 TCTTCTTTTG-GGATTTGTAATCGAGACTTTGTATTTAGAGATTTAGCCAAGGCAATGAA 224
||||| | | |||||| ||||||| |||||| |||||| |||| || |||| ||||||
Sbjct 61 TCTTCGGT-GAGGATTTACAATCGAGGCTTTGTGTTTAGAAATTTGGCTAAGGAAATGAA 119
Query 225 AGTGCCTGTTTTGCGGATTAGAGG-TGGTTCAGGTAGGCAAAGGTCGAGGCTTTTCG-TG 282
|| |||||||||||||||| ||| || |||||||| |||||||||||||||||| | ||
Sbjct 120 GGTTCCTGTTTTGCGGATTA-AGGGTGCTTCAGGTAAGCAAAGGTCGAGGCTTTT-GATG 177
Query 283 GTTAATATGTCTCAATCTCCCATTGAGCCACAATCTGGTGGTTTTGCGGCTACTGAACAA 342
|||||||||||||| |||||| ||||||| |||||| ||| || || ||||||||||||
Sbjct 178 GTTAATATGTCTCAGTCTCCCGTTGAGCCGCAATCTAGTG-TT--GCCGCTACTGAACAA 234
Query 343 ATTAAAGGAG 352
|| |||||||
Sbjct 235 ATGAAAGGAG 244
> Ahg326573 jgi|Araly1|326573|fgenesh1_pm.C_scaffold_6001793
Length=1305
Score = 333 bits (180), Expect = 2e-90
Identities = 696/940 (74%), Gaps = 55/940 (6%)
Strand=Plus/Plus
Query 475 GGTGGAGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGG-TGAAG-A-CT--A-C-GA 527
||||||||||| ||| ||||| || || |||||| | ||| ||||| | | | | ||
Sbjct 367 GGTGGAGGAGGAGGAGGTGGAGAAGGAGATGATGGAG-AGGATGAAGCAGATAAAGCTGA 425
Query 528 AGAAAAAGAGTTTGGACCGATATTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGC-TA 586
|| || |||||||| ||||| ||||| |||||||| || ||||| ||||| ||| | ||
Sbjct 426 GGAGAAGGAGTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAAGAGACAGAA-CGTA 484
Query 587 GA-GGAGCTACTCTT-CCATCTGATATGTTGGAAGCTGCTAAGAACTAT-GGGATCCGCA 643
|| ||| ||| || || |||||||||||||||||||| | | | ||| | || |
Sbjct 485 GAGGGA-TTAC-GTTACCGGAGGATATGTTGGAAGCTGCTAA-ATCCGTGGGGCTTCGGA 541
Query 644 AAGTGCTT-CTCCTTAGGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGC- 701
|| || || || ||| | ||| | ||| | ||| | || | ||| ||||||||| |
Sbjct 542 AACTG-TTCCTTCTTCGTTACCTCGATCTACAGGGTTCTGTTTGGCCACTTGGGTTT-CT 599
Query 702 TATAAGATCATGGGCTATGCTTCGTAACAGAATGTTGGCTGATCCATC-TTTCCTCTTCA 760
||| |||||||| || |||||||| || |||||| | || ||||| || ||| || ||||
Sbjct 600 TATGAGATCATGTGCGATGCTTCGAAATAGAATGCTCGCAGATCCTTCATTT-CTTTTCA 658
Query 761 AAATAGGGGCTGAGATAGTCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGA 820
|| | || | ||||||| ||| || ||||||||||| ||| |||||||||| |||||||
Sbjct 659 AAGTTGGAACCGAGATAGCCATAGACTCTTGCTGTGCAACTTTTGCTGAAGTACAAAAGA 718
Query 821 GAGGGAAAGATTTCTGGGCGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAAC-T 879
||||| ||||||||||| | |||||||||||||||| ||||||||||| ||||| | |
Sbjct 719 GAGGGGAAGATTTCTGGTCAGAGTTTGAGTTGTATGCGGCTGATCTTTTGGTTGG-TCTT 777
Query 880 GTGGTTAACATTGCTCTGGTCGGTA-TGTTGGCGCCTTATGTTCGT-TTTGGACAACC-- 935
|| ||| | ||||| |||| || | | ||||| || |||| ||| || ||| | ||
Sbjct 778 GTAGTTGATGTTGCTTTGGTTGG-ACTATTGGCTCCCTATGCACGTATTGGGA-AGCCAT 835
Query 936 TT-CCGCATCACCTGGCTT-CTT-AGGACGCATGGTTTTTGCATAT-AATGCGCTTCCTA 991
|| |||||| | || || || ||||| | | ||| | | || | |||||||
Sbjct 836 TTGTGGCATCAACAGGTTTATTTAAGGAC-C-TTAAACGTGCTTGTGCAT-CCCTTCCTA 892
Query 992 GCAGTGTTTTTGAAGCTGAAAGGCCAGGATGTAGATTTTCCGCTCAAC-AGAG-ACTTGC 1049
|||||||||||||||||||||| || || |||| ||| || | | ||| || | | ||||
Sbjct 893 GCAGTGTTTTTGAAGCTGAAAGACCGGGTTGTAAATTCTCAGTT-AACCAGCGCA-TTGC 950
Query 1050 TACATACTTCTACAAGGGTATAATGTATGG-TGCAGTTGGATTTGGATGTGGCATTGTAG 1108
|| | |||||||||||| | ||||||| | | |||||||| || |||||| | | |
Sbjct 951 AACTTTCTTCTACAAGGGCCTCTTGTATGGGT-CGGTTGGATTCGGCTGTGGCCTCATTG 1009
Query 1109 GTCAAGGCATTGCAAATCTTATCATGACTGCCAAACGAAACATAAATAAATCAGAAGA-G 1167
|||| || ||||||||||| |||||||| || ||||| | | || |||||||| || |
Sbjct 1010 GTCAGGGAATTGCAAATCTGATCATGACGGCAAAACGGAGTGTGAAGAAATCAGAGGAAG 1069
Query 1168 AACATCCCGGTACCACCGCTAATC-AAGAGTGCAGCTCTCTGGGGTGTATTCTT-GAGTG 1225
| | |||| | ||||| || | || || || |||||||||||||| ||| | | |
Sbjct 1070 A-CGTCCCTATTCCACCTCTTTTTGAA-AGCGCTGCTCTCTGGGGTGTGTTCCTCG-GCA 1126
Query 1226 TTTCTTCGAATACTCGTTATCAAATCATCAATGGTCTAGAAAGAGTGGTCGAAGCATCAC 1285
| ||||| ||| | ||||| ||||||||||| || || || | || || |||| |||
Sbjct 1127 TATCTTCCAATGCACGTTACCAAATCATCAACGGCCTCGAGCGCGTCGTAGAAGGTTCAA 1186
Query 1286 CTTTTGCCAA--GAAATTCCCTCCGG-CGGCTATGGCCTTCACAGTTGGTGTACGGTTGG 1342
| ||||| | | |||| | || || | ||||| ||||| || || || ||||| |
Sbjct 1187 CAGCGGCCAAACGCA-TTCC-TGTGGTCGCC-ATGGCATTCACGGTGGGAGTCCGGTTTG 1243
Query 1343 CCAATAACATCTACGGCGGAATGCAGTTTGTGGATTGGGC 1382
| || || | || ||||| ||||| ||||||||||||||
Sbjct 1244 CTAACAATGTGTATGGCGGTATGCAATTTGTGGATTGGGC 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5