BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37870.1

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321490 jgi|Araly1|321490|fgenesh1_pm.C_scaffold_4001547           516    8e-146


> Ahg321490 jgi|Araly1|321490|fgenesh1_pm.C_scaffold_4001547
Length=348

 Score =  516 bits (279),  Expect = 8e-146
 Identities = 327/350 (93%), Gaps = 4/350 (1%)
 Strand=Plus/Plus

Query  42   ATGAAGTGTTGTAAGTTTGTTGCAGTGGCTTTGATGAGTCTTCTGATCTCACTT-GCTTC  100
            ||||||||||||| |||||||| ||||||||||||||||||||| ||| || || |||||
Sbjct  1    ATGAAGTGTTGTAGGTTTGTTGTAGTGGCTTTGATGAGTCTTCTCATCACA-TTGGCTTC  59

Query  101  CGTTGAGGC-GGCAGGTGAGTGTGGTCGCATGCCAATTAATCAAGCCGCGGCTAGCCTAA  159
            |  |||||| | | || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  60   CACTGAGGCAGTC-GGAGAGTGTGGTCGAATGCCAATTAATCAAGCCGCGGCTAGCCTAA  118

Query  160  GCCCGTGTTTGCCTGCTACAAAGAACCCGAGGGGTAAGGTTCCACCGGTTTGCTGTGCCA  219
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  119  GCCCGTGTTTGCCTGCTACAAAGAACCCGAGGGGTAAAGTTCCACCGGTTTGTTGTGCCA  178

Query  220  AAGTTGGTGCTCTCATTAGAACCAATCCTCGTTGTCTTTGTGCTGTCATGCTCTCTCCTT  279
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  179  AAGTGGGTGCTCTCATTAGAACCAATCCTCGCTGTCTTTGTGCTGTCATGCTCTCTCCTT  238

Query  280  TAGCAAAGAAAGCCGGAATCAATCCTGGAATCGCAATCGGCGTTCCTAAACGCTGTAACA  339
            |||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct  239  TAGCCAAGAAAGCTGGAATCAATCCTGGTATCGCAATCGGTGTTCCTAAACGCTGTAACA  298

Query  340  TCCGAAACCGCCCTGCTGGCAAGCGATGTGGACGTTACATTGTTCCATGA  389
            |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  299  TCCGCAACCGCCCTGCTGGCAAGCGATGTGGACGCTACATTGTTCCATGA  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20947418361


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5