BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37880.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482794 jgi|Araly1|482794|fgenesh2_kg.4__1854__AT2G37880.1 1504 0.0
> Ahg482794 jgi|Araly1|482794|fgenesh2_kg.4__1854__AT2G37880.1
Length=967
Score = 1504 bits (814), Expect = 0.0
Identities = 903/945 (96%), Gaps = 9/945 (1%)
Strand=Plus/Plus
Query 48 agagagagagagagaACAAAGAAGGATGACGAAAATTGACTCTCTCCGTCGATTTCTTCT 107
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AGAGAGAGAAAGAGAATAAAGAAGGATGACGAAAATTGACTCTCTCCGTCGATTTCTTCT 84
Query 108 TCCATGTATCTCAACTCCGACGAATC-CAACCACCGTATCAACAACATCCACCGGAGCTT 166
|||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 85 TCCATGTATCACACCTCCGACGAA-CTCAACCACCGTATCAACAACATCCACCGGAGCTT 143
Query 167 CCAAGAAACGTCTCAGTACTTCCCTAAGAGACGATATCGACGTTCAAGATTCAGCTTCTT 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CCAAGAAACGTCTCAGTACTTCCCTAAGAGACGATATCGACGTTCAAGATTCAGCTTCTT 203
Query 227 CCTCCGCCTCTTCCTCCGAGGCTACTTCCGCCG--TC-GACTACAGCATATCCGCCGTCA 283
||||||||||||||||||||||||||||||||| | ||||| | | ||||||||||||
Sbjct 204 CCTCCGCCTCTTCCTCCGAGGCTACTTCCGCCGCCGCTGACTATAACCTATCCGCCGTCA 263
Query 284 CGGTGCCGCAGAGACCGTCGAAGACGATGGTGATTGGTACGATATTCGGTAGAAGAAAGG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CGGTGCCGCAGAGACCGTCGAAGACGATGGTGATTGGTACGATATTCGGTAGAAGAAAGG 323
Query 344 GACACGTGTGGTTCTGTGTTCAACACGACCGTCTCTCTGTTAAACCAATCCTTCTCCTCG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GACACGTGTGGTTCTGTGTTCAACACGACCGTCTCTCTGTTAAACCAATCCTTCTCCTCG 383
Query 404 AGCTTTCAATAGCTACGAGCCAGTTAGTTCACGAGATGGGTTCGGGTCTTGTTCGTGTCG 463
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 384 AGCTTTCAATAGCTACTAGCCAGTTAGTTCACGAGATGGGTTCGGGTCTTGTTCGTGTGG 443
Query 464 CTTTAGAATGCCCGACCCGACCCGAATTGAAGTCTTGCTTGCTGAGATCCGTACCCGTTT 523
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 444 CTTTAGAATGCCCGACCCGACCCGAATTGAAGTCGTGTTTGCTAAGATCCGTACCCGTTT 503
Query 524 GGACGATGTTTTGTAACGGAAGGAAGCTAGGGTTTGCTGTACGGAGAAGTGCTAATGAAG 583
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 504 GGACGATGTTCTGTAACGGAAGAAAGCTAGGTTTTGCTGTACGGAGAAGTGCTAATGAAG 563
Query 584 AGACGAGGATGATGTTGAAGAGATTGGAGTCTATGACTGTTGGAGCGGGTGTGTTGCCAT 643
| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 564 AAACGAGGTTGATGTTGAAGAGATTGGAGTCTATGACGGTTGGTGCGGGTGTGTTGCCAT 623
Query 644 CTGGATCCGGGTTGGGTGGGTCTGATGAATCGGATACTGATGAGGTTATGTATATGAGAG 703
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 624 CTGGATCCGGGTTGGGTGGGTCGGGTGAATCGGATACTGATGAGGTTATGTATATGAGGG 683
Query 704 CGAATTATGAGCATGTTGTTGGTAGCTCTGACTCGGAGTCGTTTCATCTCATTAACCCTG 763
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 684 CGAATTATGAGCATGTTGTTGGTAGCTCTGACTCGGAGTCGTTTCATCTCATTAACCCGG 743
Query 764 ATGCTAACTCTGCTCAAGAACTCAGTATCTTCTTGCTCAGGACCTCTAGTTGAATTGGCC 823
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATGCTAACTCGGCTCAAGAACTCAGTATCTTCTTGCTCAGGACCTCTAGTTGAATTGGCC 803
Query 824 TTTTGGGGTAACTTATGAAT-CATTTTCATCATGTTCAGAGATTGTGAAGTCACATGAGA 882
|||||||||||||||||||| | ||||||||| ||||||||||| |||||||| ||||||
Sbjct 804 TTTTGGGGTAACTTATGAATAC-TTTTCATCAAGTTCAGAGATTTTGAAGTCAGATGAGA 862
Query 883 AAGATTGAGATTTTG--AGAGTTCTTGATGAGATATTTCTTTGTGGGTCGTTAGTTCTAG 940
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 863 AAAATTGAGATTTTTTCAGAGTTCTTGATGAGATATTTCTTTGTGGGTCGTTGGTTCTTG 922
Query 941 ATCTTTGTAAAACATTATTTTGTTAGAAAGATTGATGAttttttt 985
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 ATCTTTGTAAAACATTTTTTTGTTAGAAAGATTGATGATTTTTTT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5