BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37890.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549 1245 0.0
Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1 693 0.0
> Ahg321492 jgi|Araly1|321492|fgenesh1_pm.C_scaffold_4001549
Length=1044
Score = 1245 bits (674), Expect = 0.0
Identities = 744/778 (96%), Gaps = 3/778 (0%)
Strand=Plus/Plus
Query 161 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTCGATGGAGCTCAGAGTGCTCTTAACACT 220
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTGGATGGAGCTCAGAGTGCTCTTAACACT 60
Query 221 GCAACCACTGTTCATAGTAGCGTCGTCATGACGCAGATTAAGCCGCAGGCAAAGCTAGGA 280
||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct 61 GCAACCACTGTTCATAGTAGCGTCG---TGCCTCAGATTAAGCCGCAGGCGAAGCTAGGC 117
Query 281 ACCTTCCAGAATCTCCTCGCTGGTGGTATTGCCGGCGCCATTAGCAAGACATGTACCGCT 340
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 118 ACCTTCCAGAATCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCT 177
Query 341 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAGTG 400
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTG 237
Query 401 TTAAGCCGTCCAAACTTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 460
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTAAGCCGTCCAAGCTTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 297
Query 461 GCCTTTTGGAAAGGAAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 520
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCCTTTTGGAAAGGGAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 357
Query 521 TTCTATGCATATGAGAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 580
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCTTTGCATATGAAAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 417
Query 581 ATAGGAAATACGAGTGGCAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 418 ATAGGAAATACGAGTGGCAACCCGATTGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATT 477
Query 641 ACAGCTGCTACAGCTACATATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGG 700
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACAGCTGCTACAGCTACCTATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGA 537
Query 701 AATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 760
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AATGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 597
Query 761 ATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGCT 820
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 598 CTTTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCT 657
Query 821 ATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCATTCTCATAGGCCAAATGAT 880
||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 658 ATCAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCATTCTCATAGGCCAAACGAT 717
Query 881 TCGGATTTGGTTGTTTCTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 938
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCGAATTTGGTTGTTACTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 775
Score = 379 bits (205), Expect = 3e-104
Identities = 227/238 (95%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 866
Query 997 AGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 1056
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 926
Query 1057 CTTCAAAGGGATATACAGAGGAATATTGCCTGAATATTACAAAGTAGTTCCTGGCGTTGG 1116
| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 927 CATCAGAGGTTTATACAGAGGAATATTGCCTGAATATTACAAAGTGGTTCCTGGCGTTGG 986
Query 1117 CATCGTCTTCATGACATACGATGCTTTGCGGAGACTCTTAACTTCTCTCCCCGATTGA 1174
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 987 CATCGTCTTCATGACATACGAGGCTTTGAGGAGACTCTTAACTTCTCTCCCCAATTGA 1044
> Ahg485785 jgi|Araly1|485785|fgenesh2_kg.5__1777__AT3G53940.1
Length=1482
Score = 693 bits (375), Expect = 0.0
Identities = 706/863 (82%), Gaps = 34/863 (4%)
Strand=Plus/Plus
Query 292 TCTCCTCGCTGGTGGTATTGCCGGCGCCA-TTAGCAAGACATGTACCGCTCCTCTTGCTC 350
||| ||||| ||||| || ||||||| || |||| || || || ||||||||||||||||
Sbjct 394 TCTTCTCGCCGGTGGAATCGCCGGCG-CATTTAGTAAAACTTGCACCGCTCCTCTTGCTC 452
Query 351 GCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGC-AGTGTTAAGCCGT 409
|||||||||||||||||||| | ||||| ||||| || |||| ||| | | || ||| ||
Sbjct 453 GCCTCACCATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCGA-TCTTGAGCAGT 511
Query 410 CCAAAC-TTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTG 468
|||||| || ||| ||||||||| |||||| |||| |||||||| | |||||| |||||
Sbjct 512 CCAAACATTT-GGCATGAAGCTTCGCGTATTGTCAAGGAGGAAGGTTTTAGAGCATTTTG 570
Query 469 GAAAGGAAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTAT 526
||||||||| ||||||||||||| | || | || |||| ||| |||||| |||||||||
Sbjct 571 GAAAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCCTATGGTGCAGTTAACTTCTAT 628
Query 527 GCATATGA-GAAGTACAAT-CTATTTTT-CAATTCAAATCCAGTCGTACAGAGTTTTATA 583
|||||||| ||| ||||| || || || || | | ||||||||| | ||||||| || |
Sbjct 629 GCATATGAAGAA-TACAAGACT-TTCTTGCACT-CGAATCCAGTCTTGCAGAGTTATAAA 685
Query 584 GGAAATAC-GA-GTGG-CAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640
|||||| | | |||| || | | | ||||| ||||| |||||||||||||||||| |
Sbjct 686 GGAAATGCAGGTGTGGACATTTC--T-GTGCACTTTGTAAGTGGTGGCTTGGCTGGACTA 742
Query 641 ACAGCTGCTACAGCTACATATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAG 699
||||||||| ||||||| || ||| ||||||||||| ||||| || ||| ||||||||||
Sbjct 743 ACAGCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAG 801
Query 700 GAATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGG 759
||| |||| || || |||||| ||| |||| | ||||||||||| ||||||||||| ||
Sbjct 802 AAATTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAAGG 861
Query 760 AATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGC 819
|||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |||||
Sbjct 862 AATTTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGCCTTGC 921
Query 820 TATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCAT-TCTCATAGGCCAAATG 878
|||| ||||| ||||| ||| || | ||| ||||||| | ||||||||||| ||||
Sbjct 922 AATCAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATG 980
Query 879 ATTCGGATTTGGTTGTTTCTCTTGTTTCTGG-AGG-TCTAGCTGGAGCTGTTTCTTCAAC 936
|||| || || ||| ||||| || ||| || ||| ||||| |||||| || ||
Sbjct 981 ATTCAAATGCCGTGGTTAGTCTTGGTTGTGGCAGCCTCT--CTGGAATTGTTTCCTCGAC 1038
Query 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGT-GGAAGGAGCTGGTGGAA 995
||| || | ||||||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 1039 AGCGACTTTCCCATTGGACCTGGTGAGAAGAAGAATGCA-GTTGGAAGGAGCTGGTGGGC 1097
Query 996 GAGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 1055
|||| |||| || | ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1098 GAGCGCGAGTCTATACCACGGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1157
Query 1056 GCTTCAAAGGGATATACAGAGGAAT-ATTGCCTGAATATTACAAAGTAGTTCCTGGCGTT 1114
|| | | |||| ||||||||||||| || || ||||| |||||||| |||||||| |||
Sbjct 1158 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1216
Query 1115 GGCATCGTCTTCATGACATACGA 1137
||||| | ||||||||||| |||
Sbjct 1217 GGCATTGCCTTCATGACATTCGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5