BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37900.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482796 jgi|Araly1|482796|fgenesh2_kg.4__1856__AT2G37900.1 2625 0.0
Ahg938307 jgi|Araly1|938307|scaffold_502498.1 1092 0.0
> Ahg482796 jgi|Araly1|482796|fgenesh2_kg.4__1856__AT2G37900.1
Length=1749
Score = 2625 bits (1421), Expect = 0.0
Identities = 1633/1735 (94%), Gaps = 15/1735 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCATAAGAATATTGGTGCAGAAGTACTTCAAGATACGTACGATGATCAACAGAAA 60
|||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGCATAAGAAGATTGGTGCAG-A--ACTTCAAGATTCGTACGATGATCAACAGAAA 57
Query 61 TGGGTTCTTGATTCTTCTCTTGATAGCAGAGGACGTGTTCCTCTTCGGGCTCGAACTGGC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGGGTTCTTGATTCTTCTCTCGATAGCAGAGGACGTGTTCCTCTTCGGGCTCGAACTGGC 117
Query 121 GCTTGG-AGAGCTGCACTCTTCATCATCGCGATCGAGTTCAGCGAGAGATTGAGTTACTT 179
|||||| || ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 118 GCTTGGAAG-GCTGCACTCTTTATCATAGCAATCGAGTTCAGCGAGAGATTGAGTTACTT 176
Query 180 CGGGTTAGCTACAAACTTGGTCGTCTACCTAACAACAATTCTAAACCAAGATCTCAAGAT 239
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 177 CGGGTTAGCTACGAACTTGGTTGTCTACCTAACAACAATTCTCCACCAAGATCTCAAGAT 236
Query 240 GGCTATAAGAAATGTGAACTACTGGTCAGGTGTCACTACTTTGATGCCTCTTCTTGGAGG 299
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 237 GGCTATAAGAAATGTGAACTACTGGTCGGGTGTCACTACTTTGATGCCTCTCCTTGGAGG 296
Query 300 CTTTATAGCCGATGCATATCTAGGCCGTTA-TGCTACTGTCTTGGTTGCAACCACCATTT 358
||||||||||||||| ||||| |||||||| | | |||||||||||||||||||||||||
Sbjct 297 CTTTATAGCCGATGCTTATCTCGGCCGTTACT-CCACTGTCTTGGTTGCAACCACCATTT 355
Query 359 ATCTTATGGGTTTGGTCCTTTTAACAATGTCCTGGTTCATACCAGGCTTAAAACCTTGTC 418
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 356 ATCTTATGGGTTTGGTCCTTTTAACAATGTCCTGGTTTATACCAGGCTTGAAACCTTGTC 415
Query 419 ACCAAGAAGTGTGCGTTGAACCTAGAAAAGCACACGAAGTAGCCTTCTTCATTGCCATTT 478
| |||| |||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 416 ATGAAGATGTGTGCAATGAACCTAGGAAAGCACACGAAATAGCCTTCTTCATTGCCATTT 475
Query 479 ACTTGATCTCCATAGGGACTGGAGGTCATAAGCCTTCCCTTGAAAGCTTTGGTGCTGACC 538
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 476 ACTTGATCTCCATAGGGACTGGAGGTCATAAACCTTCCCTTGAGAGCTTTGGTGCTGACC 535
Query 539 AATTCGACGATGACCATGTTGAAGAAAGAAAGATGAAAATGTCTTTCTTTAACTGGTGGA 598
||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 536 AATTCGAGGATGATCATGTTGAAGAAAGAAAGATGAAGATGTCTTTTTTTAACTGGTGGA 595
Query 599 ACGTTAGTCTATGTGCTGGTATTCTAACGGCCGTGACTGCTGTTGCCTATATCGAAGACC 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 596 ACGTTAGTCTATGTGCTGGTATTCTAACGGCCGTGACTGCTGTTGTCTATATCGAAGACC 655
Query 659 GGGTTGGTTGGGGCGTTGCTGGCATCATACTAACTGTAGTCATGGCTATATCACTCATCA 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 GGGTTGGTTGGGGTGTTGCTGGCATCATACTAACTGTAGTCATGGCTATATCACTTATCA 715
Query 719 TCTTCTTCATTGGAAAACCATTCTATCGTTACCGGACACCTTCTGGTAGCCCTTTGACAC 778
||||| ||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |
Sbjct 716 TCTTCCTCATTGGAAAACCATTCTATCGTTATCGGACTCCTTCGGGTAGTCCTTTGACTC 775
Query 779 CAATCTTGCAAGTCTTTGTTGCCGCCATTGCCAAAAGAAATCTACCTTATCCTTCTGATC 838
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 776 CAATCTTGCAAGTCTTTGTTGCGGCCATTGCCAAAAGAAATCTACCTTACCCTTCTGATC 835
Query 839 CTTCTCTGCTTCATGAAGT-GTCCAAGACAGAGTTTACTAGTGGCCGGCTTCTCTGTCAC 897
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 836 CTTCTCTGCTTCATGAAGTTG-CCAAGGCAGAGTTTACTAGTGGCCGGCTTCTCTGTCAC 894
Query 898 ACAGAGCATCTTAAATTTCTTGACAAGGCAGCAATTATCGAAGACAAAAATCCTCTGGCC 957
||| ||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||
Sbjct 895 ACACAGCATCTTAAATTTCTTGACAAGGCCGCAATTATTGAAGACAGCAGTCCTCTGGCC 954
Query 958 CTCGAGAAACAGAGTCCATGGAGACTTC-TAACGTTGACAAAAGTCGAGGAAACGAAGCT 1016
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 955 CTCGAGAAACAGAGTCCATGGAGACT-CGTAACATTGACAAAAGTCGAGGAAACGAAGCT 1013
Query 1017 GATCATCAACGTGATTCCAATATGGTTCTCCACGTTGGCCTTTGGCATATGTGCAACACA 1076
||||||||| |||||||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 1014 GATCATCAATGTGATTCCCATATGGCTCTCCACGTTGGCCTTCGGCATCTGTGCAACACA 1073
Query 1077 AGCTTCGACGTTTTTCATCAAACAAGCAATAACCATGGACAGACACATCGGTGGCTTCAC 1136
|| |||||| || ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1074 AGGTTCGACCTTCTTCATCAAACAAGCAATGACTATGGACAGACACATCGGTGGCTTCAC 1133
Query 1137 AGTTCCTCCAGCTTCCATGTTTACACTTACCGCCCTCACATTGATCATCTCACTCACTGT 1196
| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1134 ACTTCCTCCAGCTTCCATGTTTACACTCACCGCCCTCACATTGATAATCTCACTCACTCT 1193
Query 1197 CTATGAGAAACTCCTCGTTCCCTTGCTAAGAAGCATCACACGGAATCAAAGAGGCATCAA 1256
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1194 CTATGAGAAAATCCTCGTTCCCTTGCTAAGAAACATCACACGGAATCAAAGAGGCATCAA 1253
Query 1257 CATTCTCCAAAGAATCGGGACCGGTATGATTTTCTCCCTCATCACCATGATCATTGCAGC 1316
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1254 CATTCTCCAAAGAATCGGGACCGGTATGGTATTCTCCCTCATCACCATGATCATTGCAGC 1313
Query 1317 TCTAGTTGAGAAACAACGATTGGACCGTACCAACAACAACAA-AC-CC-ATGAGTGTGAT 1373
||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 1314 TCTAGTTGAGAAACAACGATTAGACCGTACCAACAACAACAACAAACCTATGAGTGTGAC 1373
Query 1374 ATGGCTAGCTCCTCAGTTCATGGTCATTGGCTTTGCGGACGCTTTCACACTAGTTGGACT 1433
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1374 ATGGCTAGCTCCTCAATTCATGGTCATTGGCTTTGCGGACGCTTTTACACTCGTTGGACT 1433
Query 1434 CCAAGAGTACTTTTACCACCAAGTCCCTGACTCCATGAGAAGCTTAGGTATAGCGTTTTA 1493
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1434 CCAAGAGTACTTTTACCACCAAGTACCTGACTCCATGAGAAGCTTAGGTATAGCGCTTTA 1493
Query 1494 CCTAAGCGTGATAGGTGCGGCTAGCTTCCTTAACAATCTCCTGATCACAGCCGTTGATAC 1553
||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1494 CCTAAGCGTGATAGGCGTGGCTAGCTTCCTTAACAATCTCCTGATCACAGCTATTGATAC 1553
Query 1554 TCTCGCGGAGAATTTCTCGGGGAAGAGTTGGTTCGGAAAGGACCTAAACAGCAGCCGCTT 1613
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1554 TCTCGCGGAGGATTTCTCGGGGAAGAGTTGGTTCGGAAAGGACCTGAACAGTAGCCGCTT 1613
Query 1614 GGACCGGTTCTACTGGTTTCTTGCTGGTGTTATCGCTGCCAATATATGTGTCTTTGTGAT 1673
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 GGACCGATTCTACTGGTTTCTTGCTGGTGTTATCTCTGCCAATATATGTGTCTTTGTGAT 1673
Query 1674 TGTGGCAAAGAGATGTCCTTACAAAAGTGTGCAGCCAAGCCAAGGGCTCTCCTGA 1728
||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1674 TGTGGCAAAAAGATGTCCTTTCAAAAGTGTGCAGCCAAGCCAAGG-CTCTGCTGA 1727
> Ahg938307 jgi|Araly1|938307|scaffold_502498.1
Length=1849
Score = 1092 bits (591), Expect = 0.0
Identities = 1400/1776 (79%), Gaps = 113/1776 (6%)
Strand=Plus/Plus
Query 1 ATGGAGCATAAGAATATTGGTGCAGAAGTACTTCAAGA-TACGTACGATGATCAACAGAA 59
|||||||| || || ||| | ||| | ||||||||| | | || ||||||||||| ||
Sbjct 21 ATGGAGCACAACAAGGTTGATACAG-A--ACTTCAAGAGT-CATATGATGATCAACAAAA 76
Query 60 ATGGGTTCTTGATTCTTCT-CTTGATAGCAGAGGACGTG-TTCCTCTTCGGGCTCGAACT 117
||||||||||||||||||| | ||||| ||||| | | |||| ||||||||| |||
Sbjct 77 ATGGGTTCTTGATTCTTCTAC-CGATAGTAGAGG-GGAGATTCCGCTTCGGGCTAAAACC 134
Query 118 GGCGCTTGGAGAGCTGCACTCTTCATCATCGCG-ATCGAGTTCAGCGAGAGATTGAGTTA 176
|| ||||||||||||||||||||||| || | | ||||| ||||||||||| | |||||
Sbjct 135 GGAGCTTGGAGAGCTGCACTCTTCATTATTG-GTATCGAATTCAGCGAGAGGCTAAGTTA 193
Query 177 CTTCGGGTTAGCTACAAACTTGGTCGTCTACCTAACAACAATTCTAAACCAAGATCTCAA 236
||| ||| | | || ||||| || |||||| | || || ||||| |||||||||||||
Sbjct 194 CTTTGGGATCTCCACGAACTTAGTGGTCTACTTGACGACCATTCTTCACCAAGATCTCAA 253
Query 237 GATGGCTATAAGAAATGTGAACTACTGGTCAGGTGTCACTACTTTGATGCCTCTTCTTGG 296
||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 254 GATGGCTGTAAAAAATACAAACTACTGGTCTGGTGTCACTACTTTGATGCCTCTTCTTGG 313
Query 297 AGGCTTTATAGCCGATGCATATCTAGGCCGTTATGCTACTGTCTTGGTTGCAACCACCAT 356
|||||| | |||||||| ||||| |||||||||| |||||| | ||||||||||| |
Sbjct 314 AGGCTTCGTCGCCGATGCTTATCTCGGCCGTTATGGAACTGTCCTCCTTGCAACCACCGT 373
Query 357 TTATCTTATGGGTTTGGTCCTTTTAACAATGTCCTGGTTCATACCAGGCTTAAAACCTTG 416
||| |||||||| ||| | || |||||| | || ||||| ||||| || || ||| ||||
Sbjct 374 TTACCTTATGGGATTGATTCTGTTAACATTATCTTGGTTTATACCGGGATTGAAAGCTTG 433
Query 417 TCACCAAGAAGTGTGCGTTGAACCTAGAAAAGCACACGA-AGTAGCCTTCTTCATTGCCA 475
||| ||||| |||| ||||| || || ||||| ||||| | |||||||||||||||| |
Sbjct 434 TCATGAAGAAATGTGTGTTGAGCCAAGGAAAGCCCACGAGA-TAGCCTTCTTCATTGCAA 492
Query 476 TTTACTTGATCTCCATAGGGACTGGAGGTCATAAGCCTTCCCTTGAAAGCTTTGGTGCTG 535
| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||
Sbjct 493 TCTACTTGATCTCCATAGGCACTGGAGGTCATAAGCCAGCCCTTGAGAGCTTTGGAGCTG 552
Query 536 ACCAATTCGACGATGACCATGTT-GAAGAAAGAAAGATGAAAATGTCTTTCTTTAACTGG 594
|||||||||| |||| |||| | |||||| |||||||||||||||||| ||||||||||
Sbjct 553 ACCAATTCGAAGATGGCCAT-TCCGAAGAACGAAAGATGAAAATGTCTTACTTTAACTGG 611
Query 595 TGGAAC-GTTAGTCTATGTGCTGGTATTCTAACGGCCGTGACTGCTGTTGCCTATATCGA 653
|||| | | | ||||||| ||||||||| |||| || |||||||| | | |||||||||
Sbjct 612 TGGA-CTGCTGGTCTATGCGCTGGTATTTTAACCGCGGTGACTGCAATGGTCTATATCGA 670
Query 654 AGACCGGGTTGGTTGGGGCGTTGCTGGCATCATACTAACTGTAGTCATGGCTA-TATCAC 712
|||| || |||||||||| || || || |||||||| || |||||||||||| | ||
Sbjct 671 AGACAGGATTGGTTGGGGTGTGGCCGGTATCATACTCACAATAGTCATGGCTACT-TCGT 729
Query 713 TCATCATCTTC-TTCATTGGAAAACCATTCTATCGTTACCG-GACACCTTCTGGTAGCCC 770
| | |||||| || || || ||||| || || ||||| | | ||||||| ||||||||
Sbjct 730 TTTTTATCTTCCTT-ATCGGTAAACCGTTTTACCGTTATAGAG-CACCTTCCGGTAGCCC 787
Query 771 TTTGACACCAATCTTGCAAGTCTTTGTTGCCGCCATTGCCAAAAGAAATCTACCTTATCC 830
||||| ||||| |||||||||||||| ||||||||||| |||||| |||| |||| |||
Sbjct 788 ATTGACCCCAATATTGCAAGTCTTTGTCGCCGCCATTGCAAAAAGACATCTTCCTTGTCC 847
Query 831 TTCTGATCCTTCTCTGCTTCATGAAGTGTC-C-AA-GACAGAGTTTACTAGTGGCCGGCT 887
|||| ||||||| |||||||| || | | || || ||||| ||||| ||||||||
Sbjct 848 CAGTGATTCTTCTCTTCTTCATGA-GT-TAACTAATGA-AGAGTATACTAAAGGCCGGCT 904
Query 888 TCTCTGTCA-CACAGAGCATCTTAAATTTCTTGACAAGGCAGCAATTATCGAAGAC--AA 944
||| | | | |||| || ||||||||||||| ||||| |||||| |||| || ||| ||
Sbjct 905 TCTTTCT-AGCACAAAGAATCTTAAATTTCTAGACAAAGCAGCAGTTATTGAGGACCGAA 963
Query 945 A--A-ATC-CTCTGGCCCTCGAGAAACAGAGTCCATGGAGACTT-CTAACG-TTGACAAA 998
| | | | || ||| ||||| ||||||||||||||||| | |||| || |||||
Sbjct 964 ACGAGAACACTAAAGCC---GAGAAGCAGAGTCCATGGAGACTCGC-AACGGTT-ACAAA 1018
Query 999 AGTCGAGGAAACGAAGCTGA-TCATCAACGTGATTCCAATATGGTTCTCCACGTTGGCCT 1057
||| || ||| ||||| | |||||||| |||||||||| ||||||| || || ||||
Sbjct 1019 AGTGGAAGAAGTAAAGCT-ACTCATCAACATGATTCCAATCTGGTTCTTTACATTAGCCT 1077
Query 1058 TTGGCATATGTGCAACACAA-GCTTCGACGTT-TTTCATCAAACAAGCAATAACCATGGA 1115
|||| ||||| || || ||| ||| | || | ||| ||||||||||| |||| |||||
Sbjct 1078 TTGGAATATGCGCCACTCAAAGCT-CAACACTCTTT-ATCAAACAAGCCATAATAATGGA 1135
Query 1116 CAGACACATC---GGTG----GCTTCACAGTTCCTCCAGCTTCCAT-GTT-TAC-A-CTT 1164
| |||||||| || | |||||| ||||||||||||||| || ||| | | | | |
Sbjct 1136 CCGACACATCACCGG-GACAAGCTTCATAGTTCCTCCAGCTTC-ATTGTTCT-CTATCAT 1192
Query 1165 ACCGCCCTCACATTGATCATCTCAC-TCACTGTCTATGAGAAACTCCTCGTTCC-CTTGC 1222
| | | ||| ||| |||||| | | | || |||| |||||||||||||| || |||
Sbjct 1193 AGCTCTCTC-CATA-ATCATCAC-CGTAACAATCTACGAGAAACTCCTCGTGCCTCTTT- 1248
Query 1223 TAAGAAGCATCACACGGAA-TCAAAGAGGCATCAACATTCTCCAAAGAATCGGGACCGGT 1281
| ||| || ||| |||| | |||||||||| | |||||| ||||||||||||| ||||
Sbjct 1249 TGAGACGCGCCACT-GGAAATGAAAGAGGCATTAGCATTCTACAAAGAATCGGGATCGGT 1307
Query 1282 ATGATTTTCTCCCTCAT-CACCATGATCATTGCAGCTCT-AGTTGAGAA-ACAACGATTG 1338
||| |||||||| | || | | ||||||||||| ||||| | ||||||| | || |||||
Sbjct 1308 ATGGTTTTCTCCTT-ATTCGCTATGATCATTGCTGCTCTGA-TTGAGAAGAAAA-GATTG 1364
Query 1339 GACC--G-TACC-AACA--ACA--AC-AA-ACCC--A--T-GAGTG-TGATATGGCTAGC 1382
|| | || |||| ||| | || ||| | | ||||| | |||||| ||||
Sbjct 1365 GATTATGCTAAGGAACATCACATGAGTAAGACCATGACCTTGAGTGCT-ATATGGTTAGC 1423
Query 1383 TCCTCAGTTCATGGTCATT-GGCTTTGCGGACGCTTTCACACTAGTTGGACTCCAAGAGT 1441
|||||| ||| | ||| || || ||||||||||||| || || || || || ||||| |
Sbjct 1424 TCCTCAATTCCTAGTC-TTAGGAGTTGCGGACGCTTTTACTCTTGTGGGTCTTCAAGAAT 1482
Query 1442 ACTTT-TACCACCAAGTCCCTGACTCCATGAGAAGCTTAGGTATAGCGTTTTACCTAAGC 1500
| ||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 1483 A-TTTCTACGACCAAGTCCCAGATTCCATGAGAAGCTTAGGCATAGCGTTTTACCTCAGC 1541
Query 1501 GTGATAGGTGCGGCTAGCTTCCTTAACAATCTCCTGATCACAGCC-GTTGAT-ACTCTCG 1558
||| | || ||||||||||| | |||||||| |||| || | || ||| | | | |
Sbjct 1542 GTGCTTGGAGCGGCTAGCTTTGTCAACAATCTTTTGATTACTGTTAGT-GATCATT-TAG 1599
Query 1559 CGGAG-AATTTCTCGGGGAAGAGTTGGTTCGG-AAAGGACCTAAACAGCAGCCGCTTGGA 1616
| ||| || || ||||||||| | |||||||| |||| |||| || ||||||||||||||
Sbjct 1600 CCGAGGAAATT-TCGGGGAAGGGCTGGTTCGGGAAAG-ACCTTAATAGCAGCCGCTTGGA 1657
Query 1617 CCGGTTCTACTGGTTTCTTGCTGGTGTT-ATCGCTGCCAATATATG-TGTCTTTGTGATT 1674
||| || |||||| | || || | | || | |||||| ||||| | || |||||||||
Sbjct 1658 CCGCTTTTACTGGATGCTAGCCGCT-TTGACCGCTGCAAATATCTTCTG-CTTTGTGATC 1715
Query 1675 GTGGCAAAGAGATGTC-CTTACAAAAGTGTGCAGCC 1709
||||| | ||||| | ||||||| |||||||||||
Sbjct 1716 GTGGCCATGAGATA-CACTTACAAGAGTGTGCAGCC 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5