BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37930.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345557 jgi|Araly1|345557|fgenesh1_pg.C_scaffold_4001899 2139 0.0
> Ahg345557 jgi|Araly1|345557|fgenesh1_pg.C_scaffold_4001899
Length=1725
Score = 2139 bits (1158), Expect = 0.0
Identities = 1456/1595 (91%), Gaps = 39/1595 (2%)
Strand=Plus/Plus
Query 1 GTTTTGGGGTTTTGGATTGGAAACAGTTTGAGAAATGGAAGGATACTAATGCAGATGGAA 60
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 146 GTTTTGGGGTTTTGGATTGGAAGCAGTTCGAGAAATGGAAGGATACTAATGCAGATGGAA 205
Query 61 CCAAAGAAGCGTGTTGTAGTTACGCGGAAACAGCTGCAAGTTCGTTGGAGCTAGATTTAT 120
|||||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||
Sbjct 206 CCAAAGAAGCTTGTTGTAGTTATGCGGAAACTGCTGGAAGTTCGTTGGAATTAGATTTAT 265
Query 121 CGACCGGTGTTGTCAAAAGATTGGAGGTAGATTCGAAGTCTCAACAAATGAGGAATCAGA 180
| |||||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct 266 CAACCGGTGTAGTCAAGAGATTGGAGGTGGATTTGAAGTCTCAACACATGAGGAATCACA 325
Query 181 GTTTCTCAGTTAGATCACAAGCATTTTCAGATGCAACGGATGCTGATACAGTGATGA-GA 239
|||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| ||
Sbjct 326 GTTTCTCACTTAGATCACAAGCATTTTCAGATGCTATGGATGCTGATATAGTGATGAGGA 385
Query 240 GTGGATCAAAAGGGAAAACGAGAGCATCAACTTCTGAGTATGAAGCAGAAAGAAC-T-AA 297
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||
Sbjct 386 -TGGATCAAAAGGGAAAACGAGATCATCAACTTCTGAGTATGAAGCAGAGAGAACATCAA 444
Query 298 G----T-C-----ATGCCTCTGAGCTTAGCTCGTGTATCTCTCCAGGATCAGAGAAATTT 347
| | | ||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 445 GCATCTCCAAGTAATGCCTCTGAGCTTAGCTCTTGTATCTCTCCAGGGTCAGAGACATTT 504
Query 348 AGAACAGTTGAATGTCAAGACAGAAGGCATGATGTAGAAGGCGAGTGTTCAAGTCCGGTG 407
|||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 505 AGAACAGTTGAATGTCAAGACAGAAGGCGTGATGTCGAAGGCGAATGTTCAAGTCCGGTA 564
Query 408 AGTGTGA-TGGAAAGAAACCAAGAGAAACCATGCTTGTTGGATCAAAACATTCCCACAAT 466
| ||| | | |||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 565 ACTGT-AGTTAAAAGGAACCAAGAGAAACCATGCTTGTTGGATCAAAATATTCCTACTTT 623
Query 467 GTCATCCAAAAAGGAAAGAGATCCTTCACCTAACAGGCGGTTTAGCTTCAGTTTTAGTCA 526
| |||| |||||||| ||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 624 GACATCTAAAAAGGAGAGAGATCCTTCCCCTAACCGGAGGTTTAGCTTCAGTTTTAGTCA 683
Query 527 GATGAGTAGAAGTTTCAGTTCCAAAGAAAGCTCATCGTCATTGTCAAGCACATCTCATGC 586
||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 684 GATGAGTAGAAGTTTCAGTACCAAAGAAAGCTCATCGTCATTGTCGAGCATATCTCATGC 743
Query 587 TTCAGCTAAATCAGGTCCTTTGACATTCACCAACTCAGTTTACACCACTCACTCGACCAG 646
||||||||||||||||||||||||||||| | ||||||||||| ||||| |||| || ||
Sbjct 744 TTCAGCTAAATCAGGTCCTTTGACATTCATCGACTCAGTTTACGCCACTAACTCAACAAG 803
Query 647 AACAAAGTCTAATGGTCACAACAGAACTAGATCAGGTCCTATATTGAA-ACCCAAGACCG 705
||| ||| | ||||||||||||||||| |||||||||||| |||| || |||||||||||
Sbjct 804 AACGAAGCCGAATGGTCACAACAGAACAAGATCAGGTCCTTTATT-AATACCCAAGACCG 862
Query 706 -aaaaaaaTAATGTACCATCATTACAA---GTGGCTTCAAAACCTTCCAACACAAGACCA 761
||||| | ||| || | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 863 CAAAAAGA-AATATA-C--CATTACAAGTGGTGGCATCAAAACCTTCCAACACAAGACCA 918
Query 762 CCAACCA-AGGAAAAGAAGCAAAGCAGCTCAAGAGTT-CACGCTCTTTTACAATTCACAT 819
||||||| | |||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 919 CCAACCATA-GAAAAGAAGCAATGCAGCTCAAGA-TTCCACGCTCTTTTGCAATTCACAT 976
Query 820 TGAGAAAAGGTATCAATCTGTTTCAGTTCGTTGTTGGAGACAACAGCAATAATGTTCTCG 879
||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 977 TGAGAAAAGGTATCAATTTGTTTCAGTTTGTTGTTGGAGACAACAGCAATAACGTTCTTG 1036
Query 880 CAGCTACCATGAAGAGTTCAGATTCTTCTACACGGTCTTACACATTGTACACCGTCAACG 939
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGCTACCATGAAGAGTTCAGATTCTTCTACACGGTCTTACACATTGTACACCGTCAACG 1096
Query 940 AAGTAAAGAA-CAAGACCGGAAACTGGTTAAGCCGCCACAAGAACGAACATCCATTTGTA 998
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 AAGTAAAGAAACA-GAGCGGAAACTGGTTAAGCCGCCACAAGAACGAACATCCATTTGTA 1155
Query 999 CATACAA-TCATCGG-CGAAATGAAGACTGTTACTACTTTTACTTCAGATTCATCAATCC 1056
||||||| | ||||| | ||||||||||||||||| ||| || |||| |||||||||
Sbjct 1156 CATACAACT-ATCGGTC-AAATGAAGACTGTTACTTCTTCCACAACAGAAACATCAATCC 1213
Query 1057 ACAAATCAGAAACTGTTTTGTTCGGTGTTGACTCGACTAATGAAGAGCTTGCAGCAATAG 1116
| ||||||||| ||||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 1214 AAAAATCAGAATCTGTTTTGTTCGGTGTTGATTCAACCAATGAAGAGCTTGCAGCAATTG 1273
Query 1117 TTCAGACAAGAAACACAACTACAATAATACTCCCAAGTGGAGTTCACACATTGCCTAAAG 1176
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1274 TTCAGACAAGAAACACAACTACAATTATACTCCCAAGTGGAGTTCACACATTGCCTAAAG 1333
Query 1177 ACGGTAACAATTCTCCTCTCCCGTTGATTAACCGGTGGAAAACCGGTGGAGAATGTGACT 1236
| ||||| ||| ||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1334 ATGGTAATAATGCTCCTCTCCCGTTGATTAACCGGTGGAAATCTGGTGGGGAATGTGACT 1393
Query 1237 GCGGTGGTTGGGACATCGGTTGCAAACTCCGTGTCCTGTCTTATAATCATACAAAGACTC 1296
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct 1394 GCGGTGGTTGGGACATCGGTTGCAAACTCCGTGTCCTGTCTAATAATCATATAAAGTCTC 1453
Query 1297 AAACTTTGTCAAGCTTTCAATTGTTTGATCAGGAAAGAGACGAGCCAGCTTTCAAAATGG 1356
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1454 AAACTTTCTCAAGCTTTCAATTGTTTGATCAGGAAAGAGACGAGGCAGCTTTCAAAATGG 1513
Query 1357 TGAGCCACGGCGATGAACTCCACTCTGTTGAGTTTGGCTCATCGATCTCTCTCTTGGAAG 1416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 TGAGCCACGGGGATGAACTCCACTCTGTTGAGTTTGGCTCATCGATCTCTCTCTTGGAAG 1573
Query 1417 CGTTCTTTATTTCGTTAGCAGTAACTAGTCATCAGAGTTGGTGTCAGGAGGAAGAAGAAG 1476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CGTTCTTCATTTCGTTAGCAGTAACTAGTCATCAGAGTTGGTGTCAGGAGGAAGAAGAAG 1633
Query 1477 AAGAAGTGGTTGTGATCGGAGATTGTCTGTTAAAGAGAGAAACACCGGCGAAGTACGCAA 1536
||| ||| | |||||||||||| || |||| |||||||||||||||||||| |||||||
Sbjct 1634 AAGCAGT--T-GTGATCGGAGATGGTTTGTTGAAGAGAGAAACACCGGCGAAATACGCAA 1690
Query 1537 CGAACCCACCGGTTTCTCCAATCGGTCGGGTCTAG 1571
| |||||||||||||||||||||||||||||||||
Sbjct 1691 CAAACCCACCGGTTTCTCCAATCGGTCGGGTCTAG 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5