BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37940.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482800 jgi|Araly1|482800|fgenesh2_kg.4__1860__AT2G37940.1 1790 0.0
Ahg938313 jgi|Araly1|938313|scaffold_502504.1 944 0.0
> Ahg482800 jgi|Araly1|482800|fgenesh2_kg.4__1860__AT2G37940.1
Length=1240
Score = 1790 bits (969), Expect = 0.0
Identities = 1162/1247 (93%), Gaps = 46/1247 (4%)
Strand=Plus/Plus
Query 98 cttctttaaactttcttcttcgatctctctttgttaactttctttcgttacgtctctctc 157
||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 36 CTT-TTTAGACTTTCTTCTTCGATCTCTCTCTGTTAACTTTCTTTCGTTTCGTCTCTCTC 94
Query 158 gttctcg---ttatttcttaTTCTCAGATCTTGGATTCACGACCATCTCGATCGTTGACC 214
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 95 GTTCTCGTTTTTTTTTCTTATTCTCAGATCTTGGATTGACGACCATCTCGATCGTTGACC 154
Query 215 GTCGAATTTGGGTTCGGCTAAAAATCCAATCtttttttttCCGGTGAGAAGCTCGAGAGA 274
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 155 GTCGAATTTGGTTTCGGCTAAAAATCAAACCTTTT-----CCGGTGAGAAGCTCGAGAGA 209
Query 275 -GTATATAATTTAATAAAGGGTACGTACGATTTTGGTTGAGTGTTTTGATGATGTTGACC 333
| || | || || | | | | | || | | ||| ||| | | ||||
Sbjct 210 CG-AT-T--TT-------GGTT--G-A-G-TGTT--T-G-GTG-----ATG-T-T-GACC 241
Query 334 CAATTTGTTGGGGTGTGAAGTATACTTATGGAACTGATTGTCACAATACAAGAAGAACAA 393
||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 242 CAATTCGTTGAGGTCTGAAGTA--CTTATGGAACTGATTGTCACAATACAAGAA---CA- 295
Query 394 CATCATCAACAAACAAGAATAATAAGATGACACTTTATATTCGTCGTGAATCTTCCAAGC 453
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 296 --TCATCAACAAACAAGAATAATAAGATGACACTTTACATTCGTCGCGAATCTTCCAAGC 353
Query 454 TATGGAAGAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TATGGAAGAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGA 413
Query 514 AATATCTTCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTC 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AATATCTTCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTC 473
Query 574 ATTATATTCATCGCCCGGGACCGACACTTCAGGATCTTGGCTTCTTTCTTCTTCCGGAGC 633
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 474 ATTATATTCATCGCCCGGGACCAACGCTTCAGGATCTTGGGTTCTTTCTTCTTCCGGAGC 533
Query 634 TTGGTCAAGAGAGAAGCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTGGTCAAGAGAGAAGCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTT 593
Query 694 TCCTGTGGACTTTCCATCCATTCATTCTGAAAACCAAAAAGATATACACCGTTTTGATAT 753
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 594 TCCTGTGGACTTTCCATCCATTCATTTTGAAAACCAAAAAGATATACACCGTGTTGATAT 653
Query 754 GGTGCAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATAACTTTCTATT 813
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 654 GGTGCAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATTACTTTCTATT 713
Query 814 CAACTCAGCTTCCTGGCCCTAACTATCACTGCCGTGAGGGCTCTAAAGTTTCTAGGTTGC 873
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 714 CAACTCAGCTTCCTGGCCCTAACTATCACTGTCGCGAGGGCTCTAAAGTTTCCAGGTTGC 773
Query 874 CATGGCCCAAAAGCGCTCTTGAGGTTCTCGAGATTAACCCTCATGGGGTGATGTATGGAT 933
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 774 CATGGCCCAAAAGCGCTCTTGAGGTGCTCGAGATTAACCCTCATGGGGTGATGTACGGAT 833
Query 934 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTACC 993
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 834 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGTACTTACC 893
Query 994 AGAAATATGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCACTGCAATTGTGCAGA 1053
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 894 AGAAATACGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCATTGCAATCGTGCAGA 953
Query 1054 GCCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTAGTTGTTGCATGGTATA 1113
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 954 GTCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTCGTTGTTGCATGGTATA 1013
Query 1114 CTGTGAATTTGGTGGTGTTCTGTCTAGACAAGAAATTACCAGAATTACCAGATCGGACTG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTGTGAATTTGGTGGTGTTCTGTCTAGACAAGAAATTACCAGAATTACCAGATCGGACTG 1073
Query 1174 CTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACAAAAGAAGAGAACCACAAGCTGTTGA 1233
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 CTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACCAAAGAAGAGAACCACAAGCTGTTGA 1133
Query 1234 ATGGAAACGGTGTTGACCCTGCTGATTGGAGACCGAGGGCTCAGGTGAACGGGAAGATTG 1293
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 ATGGGAACGGTGTTGATCCTGCTGATTGGAGGCCGAGGGCTCAGGTGAACGGGAAGATTG 1193
Query 1294 ACAGCAACGGAGTTCACACGGATAACACAATGAATGGCGCGTGAAAA 1340
||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 1194 ACAGCAATGGAGTTCACACCGATAACTCAATGAATGGCGCGTGAAAA 1240
> Ahg938313 jgi|Araly1|938313|scaffold_502504.1
Length=959
Score = 944 bits (511), Expect = 0.0
Identities = 794/929 (85%), Gaps = 25/929 (3%)
Strand=Plus/Plus
Query 401 AACAAACAAGAATAATAAGATGACACTTTATATTCGTCGTGAATCTTCCAAGCTATGGAA 460
|||||||||| || || | ||||| ||||| ||||| || ||| ||||||||||||||||
Sbjct 6 AACAAACAAG-ATTAT-A-ATGACGCTTTACATTCGCCGCGAAGCTTCCAAGCTATGGAA 62
Query 461 GAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGAAATATCT 520
||||||||| || || ||| |||| ||||||||||| || ||||||||||||||||| ||
Sbjct 63 GAGATTTTGTTCGGAAATAACGACAGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCT 122
Query 521 TCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTCATTATAT 580
||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 123 TCTTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCTAGGGGAGTTCATTATAT 182
Query 581 TCATCGCCCGGGACCGACACTTCAGGA-TCTTGGCTTCTTTCTTCTTCCGGAGCTTGGTC 639
||| || || ||||| || ||||| || || |||||| ||| ||||||||||||||||||
Sbjct 183 TCACCGGCCTGGACCAACGCTTCAAGATTC-TGGCTTTTTTGTTCTTCCGGAGCTTGGTC 241
Query 640 AAGAGAGAA-GCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTTTCCTG 698
|||| | || |||||||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 242 AAGATA-AAGGCTACATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTG 300
Query 699 TGGACTTTCCATCCATTCATTC-TGAAAACCAAAAAGATATACACCGTTTTGATATGGTG 757
|||||||||||||| |||| || |||||| ||| ||||||||||| || |||||||||||
Sbjct 301 TGGACTTTCCATCCTTTCA-TCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTG 359
Query 758 CAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATAACTTTCTATTCAAC 817
||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 360 CAGGGTTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCGAC 419
Query 818 TCAGCTTCCTGGCCCTAACTATCACTGCCGTGAGGGCTCTAAAG-TTTCTAGGTTGCCAT 876
||||||||||||||| ||||||||||| || ||||| ||| || || | |||||||||
Sbjct 420 TCAGCTTCCTGGCCCCAACTATCACTGTCGAGAGGGTTCT-GAGCTTGCCAGGTTGCCAC 478
Query 877 GGCC-CAAAAGCGCTCTTGAGGTTCTCGAGATTAAC---CCTCATGGGGTGATGTATGGA 932
|||| || || || ||||||||| ||| | | ||| |||| ||||||||| || |||
Sbjct 479 GGCCACATAA-CGTTCTTGAGGTGCTCTTGCTCAACTTTCCTCGTGGGGTGATATACGGA 537
Query 933 TGCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTAC 992
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 538 TGTGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTATCCGCACTTAC 597
Query 993 CAGAAATATGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCACTGCAAT-TGTGCA 1051
|||||||| || |||||||||||||||||||||| || ||| || ||| || | ||||
Sbjct 598 CAGAAATACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCGTTGCCATCT-TGCA 656
Query 1052 GAGCCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTAGTTGTTGCATGGTA 1111
||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||
Sbjct 657 AAGCCTCTTGATTATTGCCTCCCGTAAACATTACACTGTCGATGTGGTTGTTGCGTGGTA 716
Query 1112 TACTGTGAATTTGGTGGTGTTCTGTC-TAGACAAGAAATTACCAGAATTACCAGATCGGA 1170
||||||||| ||||| || |||| || | |||||||||||||||||||| || ||||| |
Sbjct 717 TACTGTGAACTTGGTTGTCTTCT-TCCTCGACAAGAAATTACCAGAATTGCCTGATCGAA 775
Query 1171 CTGCTGTGTTGCTCCCAGTAATCTCAAAAGACAGAA-CAAAAGAAGAGAACCACAAGCTG 1229
| | || |||||||| || ||||| |||||||||| |||| |||||||| ||||| ||
Sbjct 776 CAACGGTATTGCTCCCTGTGATCTCGAAAGACAGAAGCAAA-GAAGAGAATCACAAACTC 834
Query 1230 TTGAATGGAAACGGTGTTGACCCTGCTGATTGGAGACCGAGGGCTCAGGTGAACGGGAAG 1289
||||| || ||||||||||| ||||| ||| |||||| ||||||||| ||||| || ||
Sbjct 835 TTGAACGGGAACGGTGTTGATCCTGCAGATAGGAGACTGAGGGCTCAAGTGAATGGCAA- 893
Query 1290 ATTGACAGCAACGGAGTTCACACGGATAA 1318
| |||||||| |||| |||||| |||||
Sbjct 894 A--GACAGCAATGGAGGTCACACTGATAA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5