BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37950.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1 1267 0.0
> Ahg482801 jgi|Araly1|482801|fgenesh2_kg.4__1861__AT2G37950.1
Length=935
Score = 1267 bits (686), Expect = 0.0
Identities = 883/969 (91%), Gaps = 50/969 (5%)
Strand=Plus/Plus
Query 34 TATAAATTTATTCTTCATCTTGTAGAACAATATCTTCTTCCTTAATAATAAttttttttt 93
||| ||||||||||||||||||||||| ||||||||||||||||| ||| | | |||
Sbjct 1 TATTAATTTATTCTTCATCTTGTAGAAAAATATCTTCTTCCTTAACAAT-A---TAGTTT 56
Query 94 ttCACTTTCACTCTGTTTTTAGCTTA-T-T-AATTCCTGCTCCATCACTACTCACTCACT 150
|||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||
Sbjct 57 TTCACTTTCACTCTGTTTTTAGCTTATTATGAATTCCTGCTCCACCACTACTCACTCACT 116
Query 151 CCTCCTACAATTTCGTTACTCAA-TTT-TTA-TT-ATATTTTTTG-TAAAGAACACCAAA 205
||||||||||||| ||||||||| ||| ||| || |||||||||| |||| | |||||||
Sbjct 117 CCTCCTACAATTTGGTTACTCAATTTTCTTAGTTAATATTTTTTGTTAAA-ATCACCAAA 175
Query 206 TCCACC-AAAACCTTACTTCCTTAAATCCCTTCAATTCTATTCTCATTTCCATATTTATT 264
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCCACCAAAAACC-TACTTCCTTAAATCCCTTCAATTCTATTCTCATTTCCATATTTA-- 232
Query 265 TATATACTTTGGCATTGTAAACAAAAAGAAACATTCATTAGGCAAAAATAATGACGACTG 324
| | ||||||||| | | | | ||| | | |||| |||||||||||| |
Sbjct 233 T-T-CACTTTGGCA-T-T------ATA-AAA-A---A--AGGC-AAAATAATGACG---G 271
Query 325 ACATCGATTTAGAACAAGGAGGAGCTTTTGG--AT-ATCACCGGAGGTCGTTGGACGGAA 381
||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||
Sbjct 272 ACATCGATTTAGAACAAGGAGGAGCTTTTGGATATCATCACCGGCGGTCATTGGACGGAA 331
Query 382 GTGACGTCAGCGTATATTATTCAGACGGTGAAGATGTGATGTCATGCTACTCTTACTTCT 441
||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 332 GTGACGTAAGCGTTTATTATTCAGACGGTGAAGATTTGACGTCATGCTACTCTTACTTCT 391
Query 442 ATTCGACGACTGGAGGATCGTATGAATACGAAGGAGATCAGTCGAGGAAAGTGTCGTCGG 501
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 ATTCAACGACTGGAGGATCGTATGAATACGAAGGAGATCAGTCGAGGAAAGTGTCGTCGG 451
Query 502 TGATGAGTCCCTCGTCGTCGGAGATAGATGATGATGATGC-TACGGCGCCGCCGGAGAAA 560
||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 452 TGATGAGTC--T-GTCGTCGGAGATAGATGATGATGATGCGT-CGGCGCCGCCGGAGAAA 507
Query 561 GATTGTCGGATATGTCATTTGGGAGTGGAAACGAGCGGTGGAGGTGCGATTGAATTAGGG 620
|||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 508 GATTGTCGTATATGTCATATGGGAGTGGAAACGAGCGGTGGAGGAGGGATTGAATTAGGG 567
Query 621 TGTTCTTGTAAAGACGATTTGGCTGTTGCTCATAGACAATGCGCTGAGACTTGGTTCAAG 680
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 568 TGTTCTTGTAAAGACGATTTGGCTGTTGCTCATAGACAATGTGCTGAGACTTGGTTCAAG 627
Query 681 ATCAAAGGCGACAAAACCTGCGAGATTTGCCAATCGGTAGCCCGGAACGTCGGCGGTGCG 740
|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 628 ATCAAAGGCGACAAAATCTGCGAGATTTGCCAATCGGTAGCCCGAAATGTCGGCGGTGCG 687
Query 741 AACGAAATGGTTGGGTCAACGATGGAAGAGAGGGAGTTGAGAAACGGTGA---GGAAACA 797
||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 688 AACGAAATGGTTGTGTCAACGATGGAAGAGAGGGAGTTGAGAAACAGTGATCAGGAAACT 747
Query 798 GCGGCGGGAGAAGGCGGAGGAGCAACGGTGGTGGAGAACAGATGGCAACCACAGAGAGTG 857
||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 748 GCGGCGGTAGGAGGCGGAGGAGCAACGGTGGTGGAGAACAGGTGGCAGCCACAGAGAGTG 807
Query 858 GTGAATTTGGTGTTAGCTTGTATGGTTTTTGGGTTCTTTATATCATGGATCTTTCATTTC 917
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 808 GTGAATTTAGTGTTAGCTTGTATGGTTTTTGGCTTCTTTATATCATGGATCTTTCATTTC 867
Query 918 CATGTTTCCTCTTCTTCTTGAACCCATAATAATACTTACGGTATTGCAATCAAACTACAC 977
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 868 CATGTTTCCTCTTCTTCTTGAACCCATAA-AATACTTATGGTCTTGCAATCAAACTACAC 926
Query 978 ACTTTACTT 986
|||||||||
Sbjct 927 ACTTTACTT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5