BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37960.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934498 jgi|Araly1|934498|scaffold_402486.1 2196 0.0
Ahg485803 jgi|Araly1|485803|fgenesh2_kg.5__1795__AT3G54060.1 195 1e-48
> Ahg934498 jgi|Araly1|934498|scaffold_402486.1
Length=1493
Score = 2196 bits (1189), Expect = 0.0
Identities = 1398/1497 (93%), Gaps = 22/1497 (1%)
Strand=Plus/Plus
Query 19 GATCATTAGTGTTTTCGGAGAAATGGCGAGATCAAACAGATCCAAGACTTCAGAGCGTAT 78
|||| |||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GATCTTTAG-GGTTTCGAAGAAATGGCGAAATCAAACAGATCCAAGACTTCAGAGCGTAT 59
Query 79 AATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACCTCTG 138
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 AATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTTGATCGATACCTCTG 119
Query 139 CGATAATCGCTTTTCAAAAACCAGATCACTTTTCAGATCTGAAGCTTCTTCTCTCATCTC 198
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 120 CGATAATCGCTTTTTAAAAACCCGATCTCTTTTCAGATCTGAAGCTTCTTCTCTCATCTC 179
Query 199 TAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTTACCTTTGAATGAGATTTTAAACGA 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 TAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTTACCTTTGAATGAGATTTTGAACGA 239
Query 259 ATACATTCGTCTCAAGAAGGAGAAGATTG-TGATGGATCAGGAGAAATCGAAACTGGATC 317
||| ||||| |||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 240 ATATATTCGACTCAAGAAGGAGAAGA-TGATGATGGATCAGGAGAAATTGAAACTGGATC 298
Query 318 AAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATGAATGCTTATA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATGAATGCTTATA 358
Query 378 ACT-C-CT-CCACCGCCGCAGCTCCTCCTCCTCCTCCGGTGATTACGTCGGCAGCTCCCA 434
||| | || |||||| || |||||||||||||||||| |||| || | |||||| | |
Sbjct 359 ACTCCACTGTCACCGCAGCTCCTCCTCCTCCTCCTCCGGCGATTGCGGCCGCAGCTTCAA 418
Query 435 TGGATAAACAAGTAGTTGCTTCTACTTCTAAACAGAACAATTTCGGCGTCTCTTCTTCAG 494
||| ||||| |||||||| | ||||| ||||||||| ||||| |||||||||||||
Sbjct 419 AGGAGGTCCAAGTGGTTGCTTCAAGTTCTATACAGAACAACTTCGGTGTCTCTTCTTCAG 478
Query 495 GCTGCACTGTGTACAATACA-CAAAATGCTATGACAGTATCATTACCAGGAAACAAAAGA 553
|||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||
Sbjct 479 GCTGCACTGTGTACAACACAGC-TAATGTTATGCCAGTATCATTACCAGGAAACAAAAGA 537
Query 554 GTTGGGAATTTCACAGGACCTTGTATCACTCAGTCTATAACCAAAAAGAGAAAGAGTCCT 613
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 538 GTTGGGAATTTCACAGCACCTTGTATCAGTCAGTCTATAACCAAAAAGCGAAAGAGTCCT 597
Query 614 GAAGTTTCTGTAGGAGCTCCTTCTGTTTCTAGGAAAGGTATGAAAAAGAT-CC-C-A-C- 668
||||||||| ||||||||||||||||| |||||||||||||||||||||| || | | |
Sbjct 598 GAAGTTTCTCTAGGAGCTCCTTCTGTTACTAGGAAAGGTATGAAAAAGATGCCACAAGCT 657
Query 669 ---AAGCTG-CTAATTACTTGACATTTCAAACACCATCTGAAATGCAAACGCCATTGAAC 724
||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 GATAAGGTGACTAATTACTTGACATTTCAAACACCATCTGAAATGCAAACGCCGGTGAAC 717
Query 725 AATGGTGTAGCTACTAATGAGTCGTCTGATCTTACATCAAGTGTGGCAAAGTGTTTGTTT 784
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AACGGTGTAG---CTAATGAGTCGTCTGATCTTACATCAAGTGTGGCAAAGTGTTTGTTT 774
Query 785 GACAAATCAGGCACGTCTCCTCCGAGCAACTCAACTTGTCCTAGGACACCACAACAGAAA 844
||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||
Sbjct 775 GACAAATCAGGCACGTCTCCTCCGACCAATTCAGCTTGTCCAAGGACACCACAACAGAAA 834
Query 845 GTATCTCCTCAGAGTGATAAAGAAGTGACTCCTACAAACTGCACAATTGTTACTAAGGAG 904
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 835 GTATCTCCTCAGAGTGATAAAGAAGTTACTCCTACAAACTGCACAATTGTTACTAAGGAG 894
Query 905 AGAATCACAGTCAGTCCTCTCAAACAAATTGCTTCTTATACAGTGGAGAGGAGCCATACG 964
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 895 AGAATCACAGTCAGTCCTCTCAAACAAATTGCTTCTTATACAGTGGAAAGGAGCCATACG 954
Query 965 GTTTCTTCTTTTTCGCCAGTTAAGTCTAATCTGAAAATGTCGAGTAAAAGAGATCATGTG 1024
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 955 GTTTCTTCTTTTTCGCCGGTAAAGTCTAATCTTAAAATGTCGAGTAAAAGAGATCATGTG 1014
Query 1025 AAAGGAAGGCTCAACTTCGATGATACTGAAGCCACAATGCACTTAGACGCACCTGCCACT 1084
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1015 AAAGGAAGGCTCAACTTCGATGACACTGAAGCCACAATGCACTTAGATGCACCTGCCACT 1074
Query 1085 GTGGATATGGTTTCAACTTCCTCATCTGGCTCTGAAGCAGAAGCTGATTTATTTGACATT 1144
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GCGGATATAGTTTCAACTTCCTCATCTGGCTCTGAAGCAGAAGCTGATTTATTTGACATA 1134
Query 1145 GATTTTTCCAATATAGATCTTCTGAGTGAAGACTTTTCATTTTCGGAGCTACTATTCGAT 1204
||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 GATTTCTCAAATATAGATCTTCTGAGTGAAGACTTTTCATTTTCGGAGCTACTAGTCGAT 1194
Query 1205 TTTGATATTGGTTGTGAAGAAATGTCA-AACCATTCCCTACCACAGCCATCAAATTTCCA 1263
|| ||| |||||||||||| |||| || | ||| | ||||||||||||||||||||||||
Sbjct 1195 TTCGATCTTGGTTGTGAAGGAATGCCAGACCCA-TGCCTACCACAGCCATCAAATTTCCA 1253
Query 1264 CATAGAGACTGCTTCAGGGTCATCTCCTGAATCAAGAAACACGAATCTAGAGCCTGACCA 1323
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CATAGAGAATGCTTCAGGGTCATCTCCTGAATCAAGAAACACGAATCTAGAGCCTGACCA 1313
Query 1324 GGTTGTATCAGAGTATACATCAACAGTAACAGAAATGATTCAAGGGAAAGACATGAACAC 1383
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCTTGTATCACAGTATACATCAACAGTAACAGAAATGATTCAAGGGAAAGACATGAACAC 1373
Query 1384 ACAAGGATCTGACTCTATGACTACTGTAAAGTCCATAACAAAATGCCTACGAATCTTAAG 1443
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1374 ACAAGGATCTGACTCTATGACTACTGTAAAGTCCATAACAAAATGTCTACAAATCTTAAG 1433
Query 1444 TCCTGCCAAGAATTGCAGACAGAGAGTCACACTTGACTGATTCGATCCTCCGAGTTG 1500
|||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1434 TCCTGCTAAGAATTGCAGACAGAGAGTCACAATTGACTGATTCGATTCTCCGAGTTG 1490
> Ahg485803 jgi|Araly1|485803|fgenesh2_kg.5__1795__AT3G54060.1
Length=1742
Score = 195 bits (105), Expect = 1e-48
Identities = 272/350 (78%), Gaps = 22/350 (6%)
Strand=Plus/Plus
Query 75 GTATAATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACC 134
|||| || || || ||||||||||| || | ||| | || || |||||||||| || |
Sbjct 129 GTATCATCGGGAAAGGTGAAGTTACCCCAACGCAAATTGCTTTTATCGTCGATCGCTATC 188
Query 135 TCTGCGATAATCGCTTTTCAAAAACCAG-ATCACT-TTTCAGATCTGAAGCTTCTTCTCT 192
||| ||| ||||| |||||| ||||| | | | || ||| ||||||||||||||||||||
Sbjct 189 TCTACGACAATCGATTTTCAGAAACCCGAAAC-CTCTTT-AGATCTGAAGCTTCTTCTCT 246
Query 193 CATCTCTAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTT-AC-CTTTGAATGAGATT 250
|||||||||||| ||| ||||| ||||||||||||||||| | || ||| || || ||
Sbjct 247 CATCTCTAATTCCCCAATTCGCCAAGTTCCGAATAGTTTGATGACTCTT-GA-TGCTATG 304
Query 251 TTAAACGAATACAT-TCGTCTCAAGAAGGAGAAGATTGTGA-TGGATCAGGAGAAA-TCG 307
|| ||| | ||| | || | | ||| || |||| | || | | ||||| |||||| | |
Sbjct 305 TTGAACCATTACGTATCTT-TAAAGGAGCAGAA-AGTGAGTCTCGATCAAGAGAAAGT-G 361
Query 308 AAACTGGATCAAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATG 367
||| ||||||| || |||| | | ||||| ||||| ||| | ||||||||| ||||||||
Sbjct 362 AAATTGGATCAGGAAAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGCAAAATGTGATG 421
Query 368 AATGCTTATAAC--T--CCTCCACCGCCGCAGCTCCTCCTCCTCCTCCGG 413
||| | || ||| | |||| ||||| | ||||||||||||||||||
Sbjct 422 AATTCGTACAACGCTAGCCTC-ACCGCT-C--CTCCTCCTCCTCCTCCGG 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5