BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37975.1
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934500 jgi|Araly1|934500|scaffold_402488.1 425 1e-118
> Ahg934500 jgi|Araly1|934500|scaffold_402488.1
Length=277
Score = 425 bits (230), Expect = 1e-118
Identities = 262/277 (95%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 119 AGTTTCCACAGAGAAATCATGGGGTTCTGGACACTAATGGAAGGATTGCTACTATTTGCA 178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 AGTTTCCACAGAGAAATCATGGGGTTCTGGACACTAATGGAAGGATTGCTGCTATTTGCA 62
Query 179 AACGCACTGGCTAT-CTTAAACGAAGACCGTTTTCTAGCTCCCAAAGGATGGACGCTCGC 237
|||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 63 AACGCACTGGCTATTCTCAA-CGAAGACCGTTTTCTAGCTCCCAAAGGATGGACGCTTGC 121
Query 238 AGAACTCCACCAAACGGGCAAAAGAAACTCTCTCAAAGGCCAAATCATTGGTCTCATCCA 297
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 122 AGAACTCCACCAAACCGGCAAAAGAAACTCTCTTAAAGGCCAAATCATCGGTCTTATCCA 181
Query 298 CGCCTGTCATTACATGAGGCTTCCTCTCATGCTCTTTAACTTAATTGTCATTGTCTTTAA 357
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 CGCCTGCCATTACATGAGGCTTCCTCTTATGCTCTTTAACTTAATTGTCATTGTCTTTAA 241
Query 358 GCTTTTCTCTGGTTAAAATGATCAAACCCCGTTTTTG 394
||||||||| |||||||||||||||| ||| || |||
Sbjct 242 GCTTTTCTCCGGTTAAAATGATCAAATCCC-TTCTTG 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19611972746
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5