BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37990.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482805 jgi|Araly1|482805|fgenesh2_kg.4__1865__AT2G37990.1 1742 0.0
> Ahg482805 jgi|Araly1|482805|fgenesh2_kg.4__1865__AT2G37990.1
Length=1251
Score = 1742 bits (943), Expect = 0.0
Identities = 1162/1260 (92%), Gaps = 46/1260 (4%)
Strand=Plus/Plus
Query 1 AAAATATCGCAAAACCCTAA-CAAAAAA---T-TTTCATTCTTCCTCCACTCTCTCAATT 55
|||||||||||||||||||| |||||| | |||| ||||||||||| |||||||||
Sbjct 1 AAAATATCGCAAAACCCTAAGAAAAAAAGTTTCTTTCTTTCTTCCTCCA--CTCTCAATT 58
Query 56 CCAAAACACTGCGCCGGGAAGACATGGACACCGAGATGGAGACAGAACAAATATACCAGG 115
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 CCAAAACACTGCGCCGGGAAGACATGGAGACCGAGATGGAGACAGAACAGATATACCAGG 118
Query 116 TCGATGTCGGAAATCTCTTGGCTTTCAATCCCAATCACCGCTTCCCATCTGCTCCTTCTT 175
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 TCGATGTCGGAAATCTCTTGGCTTTCAATCCCAATCACCGCTTCCCTTCTGCTCCTTCTT 178
Query 176 CAAGGGGGGAGCTTGTGAAGGAGAT-CCTAACGGAGGGAACAAAACTTGTTCAGGAAATA 234
|||||| |||||||||||| ||| | | | | ||||||||||||||||||||||| ||||
Sbjct 179 CAAGGGAGGAGCTTGTGAATGAG-TGCATTAGGGAGGGAACAAAACTTGTTCAGGCAATA 237
Query 235 GCCAATAAACTTTTCAACTTTCCTTCTACTGAAACAAATGATGGTCCTATTGTCCAATTG 294
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GCTAATACTCTTTTCAACTTTCCTTCTACTGAAACTAATGATGGTCCTATTGTCCAATTG 297
Query 295 CCTCCGCCTACAACCAAACTTCCTAGAGAGAAACATATTCCAAGGCCTAAGCCTCCTACG 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCTCCGCCTACAACCAAACTTCCTAGAGAGAAACATATTCCAAGGCCTAAGCCTCCTACA 357
Query 355 AAGTGGGAAGAGTTTGCGCTTAAGAAAGGTATACAGAAGCGCAAGAAGGAAAAAGTTGTA 414
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 358 AAGTGGGAAGAATTTGCGCTCAAGAAAGGTATACAGAAGCGCAAGAAGGATAAACTTGTA 417
Query 415 TGGGATGAACAAACTAATCAGTTTAAGCGTCGCCATGGTTATGACCGTGTTAACGATGAT 474
| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 418 TATGATGAACAAACTGATCAGTTTAAGCGCCGCCATGGTTACGACCGTGTTAACGATGAT 477
Query 475 AATGATGTTCCCATCATTGAGGCGAAA-G-AATCAGATGAACCAGGAGTAGATCCTTTTG 532
||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 478 AATGATGTTCCCATCATTGAGGC-AAAGGCAA-CAGATGAACCAGGAGTAGATCCTTTTG 535
Query 533 CCAAGAGACTAGATGATAAGAAGAAGAGAGTTGGAAAGCAAGAAAAGAATAGACTTCAGA 592
|||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 536 CCAAGAGACTGGATGACAAAAAGAAGAGAGTTGGAAAGCAAGAAAAGAATCGACTTCAGA 595
Query 593 ATCTGAAGGCTGCTGAAAAAGCTGGTGCTTTACCAAGCCATGTCCAACTTGCTGCAACAT 652
|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 ATTTGAAGGCAGCTGAAAAAGCTGGTGCTTTACCAAGCCATGTTCAACTTGCTGCAACAT 655
Query 653 CATTGCCCATATCAGGAACGAAAGCTCAACCAAAGAAAATTGGAAAGGATGAACTTGGAG 712
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGTTGCCCATATCAGGAACGAAAGCTCAACCAAAGAAAATTGGAAAGGATGAACTTGGAG 715
Query 713 ATGTAGCAGGTTTAGCCGCTACTTCAACCGCTAGTGGTGGAAAATTCGATAAAAAGTTGC 772
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 716 ACGTAGCAGGTTTAGCCGCTACTTCAACCGCTAGTGGTGGAAAATTCGATAAAAAGCTGC 775
Query 773 CTGGAGAAAAACCTCCAAAGAAGCAGGGCAAACATCACAAGTATTTACCGGTTGTATCAG 832
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 CTGGAGAAAAACCTCCTAAGAAGCAGGGCAAACATCACAAGTATTTACCGGTTGTAGCAG 835
Query 833 GGCGTGGGGATGTTAACGCAGAAAAAGAACAGACAAATAATGTACTCAGCAAGATATTCT 892
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGCGCGGGGATGCTAACGCAGAAAAAGAACAGACAAATAATGTACTCAGCAAGATATTCT 895
Query 893 CAAAGCATTCGCATGAGATCCTCAATGTTGGCAAGGCGATAAACATGTACAACGTCAAGA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CAAAGCATTCGCATGAGATCCTCAATGTTGGCAAGGCGATAAACATGTACAACGTCAAGA 955
Query 953 AGGAGAAGAAGAAGTCAGGAAGGTCAGACAAGT--------T-G-A-AA-------CCTA 994
||||||||||||||||||||||||||||||||| | | | || ||||
Sbjct 956 AGGAGAAGAAGAAGTCAGGAAGGTCAGACAAGTCAGGAAGGTCGGACAAGTTGAAACCTA 1015
Query 995 AGAAGGACATCACCAAGAAGCCTGCCAACAAAGCCAAGTGAAGAGACTCTCCCATGTCTA 1054
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAGGACATCACCAAGAAGTCTGCCAACAAAGCCAAGTGAAGAGACTCTCCCATGTCTA 1075
Query 1055 ATTTACTCTTCTATCTGTCTCCATCTTCT---ATCACAAAACAAATTTTGGGTT--GC-T 1108
||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
Sbjct 1076 ATTTACTCTTCTATCTGTCTCCATCTTCTTGTATCACTAAACAAATTTTGGGTTCCGCCT 1135
Query 1109 --CTGTTAAAGTAATACTTTATGAG-TACGTTT-ATTTTAATCTTATTGACTTCATATTT 1164
||| || || |||||||||| | || |||| || || |||||||||||||| |||
Sbjct 1136 ATCTGGTAGAGAAATACTTTAT-ATCTATGTTTGATAAAAA-CTTATTGACTTCAT-TTT 1192
Query 1165 TGCACCATAAAACAATTTAAAGCTCGCAA-GGTCTAGAAATCCAGTTTGATTTTCTCTCT 1223
|||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1193 -GCACCATACAACAATTTAAAGCTCACAAAGGTCTAGAAATCCAGTCTGATTTTCTCTCT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5