BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38000.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482806 jgi|Araly1|482806|fgenesh2_kg.4__1866__AT2G38000.1 2193 0.0
> Ahg482806 jgi|Araly1|482806|fgenesh2_kg.4__1866__AT2G38000.1
Length=1496
Score = 2193 bits (1187), Expect = 0.0
Identities = 1374/1463 (94%), Gaps = 17/1463 (1%)
Strand=Plus/Plus
Query 80 TTTGGTTAATTGGGAAGACAGAGAGATTCGTAATCCATGGATAAGCCTCTGCTTTCAGGA 139
||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 45 TTTGGTTTATTGCGAAGACATAGAGATTCGCAATCCATGGATAAGCCTCTGCTTTCAGGA 104
Query 140 TCAGAGAAAACGAATGAATCCGAGAGGTTGGATTCATACCAATACCTGCAGAGAAATAGC 199
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 105 TCAGAGAAAACGAGTGAATCCGAAAGGTTGGATTCATACCAGTACCTGCAGAGAAATAGC 164
Query 200 TCATCTGCTCGTAACCCATCTTTCGCCGGAGCTGGCGTCGTCACCGTCGAAGAAATCCGT 259
||||||||||||||||| || |||||||||||| | | ||||||||||||||||||||||
Sbjct 165 TCATCTGCTCGTAACCCTTCGTTCGCCGGAGCT-G-G-CGTCACCGTCGAAGAAATCCGT 221
Query 260 ACCGCTTCTGCTGTTTCTTCTGATCCTCCGTCTCTTTATCCTCCCGTTATCAAGACCCCT 319
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 222 ACCGCTTCTGCTGTTTCTTCTGATCCCCCGTCTCTCTATCCTCCCGTTATCAAGACCCCT 281
Query 320 GTTTCGTTACCCATTCCTCAAGCTATTGGTTATCCAAGTGCATCTGGAGCAGGTCATGAA 379
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 282 GTTTCGTTACCCATTCCTCAAGCTATTGGTTATCCGAGTGCATCTGGAGCAGGTCATGAA 341
Query 380 TTGCAACAAAGGCAGTTTCTTGATGAGATTGAAATAAGAGAGCTGCTTATTGATCATATT 439
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TTG---CAAAGGCAGTTTCTTGATGAGATTGAAATAAGAGAGCTGCTTATTGATCATATT 398
Query 440 GGTCATCGTTGCTGTTGGGGAAGCCGTCCTGCTCGTACATGGAAGATTCATGCTGTTGAA 499
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 GGCCATCGTTGCTGTTGGGGAAGCCGTCCTGCTCGTACATGGAAGATTCATGCTGTTGAA 458
Query 500 GACTGCAATGTTTATGTCGGAACTCTTGATACTTTCATTGAGGAGAGGGAAGCTTTGACA 559
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 459 GACTGCAATGTTTATGTGGGAACTCTTGACACTTTCATTGAGGAGAGGGAAGCTTTAACA 518
Query 560 CAGACTGTGCCTTTCACTGGTGGTGAATTCAATGGAAAGAAACATGGATCTGAACCGGGG 619
| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 519 CTGACAGTGCCTTTCACTGGTGGTGATTTCAATGGAAAGAAACATGGATCTGAACCGGAG 578
Query 620 TTATGGGAACTGGACCTGAGACCGCAGTTTCCTACTCTGTTTGTCCCGTATAAAGAAACT 679
|||||| || ||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 579 TTATGGCAATTGGACCTGAGATCGCAATTTCCTACTCTCTTTGTCCCGTATAAAGAAACT 638
Query 680 CAAGT-CCTGGTTCCTAATTCTGAGACTGTTGAGAAGTGCACAGGTTGCACCGGAAGAGG 738
||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 639 CAAGTTCC-GGTTCCTAATTCTGAGACTGTTGAGAAGTGCACGGGTTGCACAGGAAGAGG 697
Query 739 AGATGTAGTATGTCCAACATGCAATGCTGATGGAGAGCCAGGATTTTACAAGGAGAATCA 798
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 698 AGATGTAGTATGTCCAACATGCAATGCCGATGGAGAGCCGGGATTTTACAAGGAGAATCA 757
Query 799 GATGATGAAGTGTTCCACTTGCTATGGAAGAGGCTTGGTTGCTCATAAAGATGGGTCCGA 858
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 758 GATGATGAAGTGTTCCACTTGCTATGGAAGAGGTTTGGTTGCTCATAAAGATGGGTCTGA 817
Query 859 CACAATATGCACCAACTGTAACGGTAAGGGAAAGCTTCCTTGCCCAACTTGCCAATCTCG 918
|||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 818 CACAATATGCACAAACTGCAGCGGTAAGGGAAAGCTTCCCTGCCCAACTTGCCAATCTCG 877
Query 919 CGGGTTAATCAAATGTCAGACTTGTGACAGTACTGGTTCTCTTCTGACAAGTAGTATCGC 978
||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||
Sbjct 878 CGGGTTAATCAAATGTCAGACTTGTAACAGTACTGGATCTCTTTTGACAAGCAGTATCGC 937
Query 979 AGTTGTAAAATGGAAGACTCTGTCGAAGCGAAAGGTGAGTGCAACAAGAGGAGCTGGGTC 1038
|||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 938 AGTTGTAAGATGGAAGACTTTGTCGAAGCGAAAGGTGAGTGCAACAAGAGGGGCTGGTTC 997
Query 1039 AGTACCAGAAGAAGTATTTGACAGAGCAGAAGGAGTTCAGCTTTGCAACACACAAGCTTA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGTACCAGAAGAAGTATTTGACAGAGCAGAAGGAGTTCAGCTTTGCAACACACAAGCTTA 1057
Query 1099 CCAGTGCACGCCAGCTTACTTTGCAGACTCATATTTCCTCAACAGATTCTCCTCAGAAGT 1158
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CCAGTGCACGCCGGCTTACTTTGCAGACTCATATTTCCTCAACAGATTCTCCTCAGAAGT 1117
Query 1159 TATCTCGTTAAGAGCTGAAGTTCCACCGACAGCGAATGTAGTATGTGAGAGACACACCAT 1218
||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 1118 AATCTCGTTAAGAGCTGAAGTTCCACCGACGGCGAATGTGGTCTGCGAGAGACACACCAT 1177
Query 1219 ATCTGTTGTGCCTGTGACTCGTGTCACCATGGAAGATCGTGGGAAAGCGTTCAGCTTTTA 1278
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1178 ATCTGTTGTGCCTGTCACTCGTGTCACCATGGAAGATCGTGGTAAAGCGTTCAGCTTTTA 1237
Query 1279 CATAATCGGTTTTGGTAAGGAGATATACTTGAAAGATTATTACCCAGCAAGATTCTGTTG 1338
|||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1238 CATAATCGGTTTTGGTAAAGAGATATACTTGAAAGATCATTACCCAGCAAGGTTCTGTTG 1297
Query 1339 GGGTTTGTGTCCCTGTCTTGAGTGGTTAAAGGTTTGAAAAACCAGAGTTGATCTTTGTTC 1398
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1298 GGGTTTGTGTCCTTGTCTTGAGTGGTTAAAGGTTTGAAAAACCAGAATTGATCTTTCTTC 1357
Query 1399 TTCTCTACTTGAATGTAAAGAGACAAGATA-GAGTG-TAGTCAATG-TGTTTGAATAT-T 1454
|| |||||||| |||||||| |||| | | ||| | | || || | || | || | |
Sbjct 1358 TTGTCTACTTGGGTGTAAAGAAACAA-ACAAGAGCGGT-GTGTATACTATT-GTAT-TGT 1413
Query 1455 AGTGTGGATTGAGAGCTTTAGAGAGAAAATCAAACTGGATTTCTAGACCTT-GCGAGCTT 1513
| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 1414 ATTGTGGATTGAGAGCTTTAGAGAGAAAATCAGACTGGATTTCTAGACCTTTGTGAGCTT 1473
Query 1514 TAAATTGTTTTATGGTGCAAAAT 1536
||||||||| |||||||||||||
Sbjct 1474 TAAATTGTTGTATGGTGCAAAAT 1496
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 8 AAATTTCTCTCGCACGGAGAAGAAGATCGAATTGACCTGGGTTTTT 53
|||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAATTTATCTCACACGGAGAAGAAGATCGAATTGACCTGGGTTTTT 46
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5