BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38010.2
Length=2443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2 3869 0.0
Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752 226 6e-58
> Ahg482807 jgi|Araly1|482807|fgenesh2_kg.4__1867__AT2G38010.2
Length=2408
Score = 3869 bits (2095), Expect = 0.0
Identities = 2268/2354 (96%), Gaps = 2/2354 (0%)
Strand=Plus/Plus
Query 76 TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCTGCCGCTGATGTCAACATGATG 135
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 55 TACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCAGCCGCTGATGTCAACATGATG 114
Query 136 GGCTACGCAAACTCAGATCAAATCGCTTCCGGTATTCATTTCCGGTTACGAGCTCGTGCC 195
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 115 GGCTACGCAAACTCCGATCAAATCGCTTCCGGGATTCATTTCCGGTTACGAGCTCGTGCC 174
Query 196 TTCATCGTCGCTGAGCCTCAAGGTAACCGCGTCGTGTTTGTCAATCTCGACGCTTGTATG 255
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 TTCATCGTCGCTGAGCCCCAAGGTAACCGCGTCGCATTTGTCAATCTCGACGCTTGTATG 234
Query 256 GCTTCTCAAATCGTTACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT 315
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GCTTCTCAAATCGTCACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTT 294
Query 316 TACACAGAGAAGAATGTAGCAATAAGTGGAATTCACACACATGCTGGACCAGGAGGATAT 375
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 295 TACACAGAGAAGAATGTAGCAATAAGTGGAATTCATACGCATGCTGGACCTGGAGGATAT 354
Query 376 CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGACGTT 435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 CTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGATGTT 414
Query 436 GTTGTTAACGGCATTGAGCAAAGCATTGTCCAAGCACACGAAAGCCTACGTCCTGGTTCT 495
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 415 GTTGTTAACGGCATTGAGCAAAGCATTGTTCAGGCACACGAAAGCCTCCGTCCTGGTTCT 474
Query 496 GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTAT 534
Query 556 CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATGATGTTGATAAGGAAATGACT 615
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 535 CTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATAATGTTGATAAAGAAATGACG 594
Query 616 CTTGTTAAGTTTGTTGATTCTCAGTTGGGACCTACTGGTAGTTTTAACTGGTTTGCTACT 675
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 595 CTTGTTAAGTTTGTTGATTCTCAGTTGGGGCCTATTGGTAGTTTTAACTGGTTTGCTACT 654
Query 676 CATGGGACTTCCATGAGTCGGACTAACTCGTTGATTAGTGGAGATAACAAAGGCGCTGCA 735
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 CATGGGACTTCCATGAGCCGGACTAACTCGTTGATTAGTGGAGATAATAAAGGCGCTGCA 714
Query 736 GCTCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGTTAGCTCT-AGAAA 794
|| ||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||
Sbjct 715 GCGCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGATAG-TTTAAGAAA 773
Query 795 CATCCCTCGGAGAGTATCAACCATTGTTTCTGATTTCAGTAGAAACCGTGAGTCATATCC 854
||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 774 TATCCCTCGGAGAGTATCAAGCATTGTTTCTGATTTCAGTAGAAACCGTGAGTTAAATCC 833
Query 855 TTTCCTTGAGTTACCTAATGTAGCAATTCTCTACATTGCAGTTGCAGAGAGACTGATGTG 914
|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 834 TTTCATTGAGTTACCTAATGTAGCAACTCTCTACATTGCAGTTGCAGCGAGACTGATGTG 893
Query 915 GAAAGTTATGGTTTTGTTTTACTTTGTTTCAGAGAGTAGACTTTTGGATATTGCGGCTAC 974
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 894 GAAAGTTATGGTTTTGTTTTTGTTTGTTTCAGAGAGTAGACTTTTGGATATTGCAGCTAC 953
Query 975 TTATAAGTCATCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG 1034
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTATAAGTCCTCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAG 1013
Query 1035 AAACGGTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGATGTGAG 1094
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 AAACACTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGACGTGAG 1073
Query 1095 TCCAAATACTCTTGGTACCTTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCACAG 1154
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1074 TCCAAATACTCTTGGTACATTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCATAG 1133
Query 1155 TACCTGCAATGGACAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT 1214
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TACTTGCAATGGAAAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATT 1193
Query 1215 TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCTGTGGAACTTTTTAACAA 1274
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1194 TGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCAGTAGAACTTTTTAATAA 1253
Query 1275 AGCTACAGAGAAGCTGCAGGGGAAAATTGGTTACCAACATGCGTATCTAGATTTCTCGAA 1334
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 AGCTACAGAGAAGCTGCAGGGAAAAATTGGTTACCAACATGCGTATCTAGATTTCTCAAA 1313
Query 1335 TCTTGATGTCACAGTTCCTAAAGCAGGCGGTGGCTCTGAGACGGTTAAGACATGTCCAGC 1394
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1314 TCTTGATGTCACAGTTCCTAAAGCAGGCGGCGGCTCTGAGACAGTTAAGACATGTCCAGC 1373
Query 1395 TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAA 1433
Query 1455 ACAAGGAGATGATCAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTAAGAACTCC 1514
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 ACAAGGAGATGATAAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTGAGAACTCC 1493
Query 1515 TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGAT 1553
Query 1575 GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCATTGGCCA 1634
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1554 GAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCGTTGGCCA 1613
Query 1635 ATTAGTCATCCTCAGTGTTCCCGGAGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGA 1694
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1614 ATTAGTCATCCTCAGTGTCCCCGGAGAATTCACAACAATGGCTGGAAGACGTCTCCGTGA 1673
Query 1695 CGCTATCAAGTCTTTTCTCATTTCTTCGGACCCCAAGGAATTCAGCAACAACATGCATGT 1754
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1674 TGCTATCAAGTCTTTTCTCATCTCTTTGGACCCCAAGGAATTCAGCAACAACATGCATGT 1733
Query 1755 CGTAATCGCAGGTCTCACCAACACCTATTCTCAGTACATCGCCACTTTCGAAGAGTACGA 1814
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 CGTAATCGCAGGTCTCACCAACACATATTCTCAGTACATCGCCACTTTCGAAGAGTACGA 1793
Query 1815 GGTTCAAAGATACGAGGGCGCCTCAACGTTATACGGACGACACACACTCACTGCTTATAT 1874
|||||||||||||||||| || |||||| |||| |||| |||||||||||||||||||||
Sbjct 1794 GGTTCAAAGATACGAGGGAGCTTCAACGCTATATGGACCACACACACTCACTGCTTATAT 1853
Query 1875 CCAAGAGTTCAAGAAACTAGCCACAGCTTTAGTTAACGGTCTAACACTCCCACGTGGTCC 1934
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1854 CCAAGAGTTCAAGAAACTAGCCACAGCTTTGGTTAACGGTCTAACACTCCCACGTGGTCC 1913
Query 1935 GCAACCTCCTGACCTTTTAGACAAACAGATCAGTTTACTATCCCCTGTGGTTGTAGACTC 1994
|||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1914 GCAACCGCCTGACCTTTTAGACAAACAGATTAGTTTACTATCCCCTGTAGTCGTAGACTC 1973
Query 1995 AACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACGTT 2054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1974 GACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACTTT 2033
Query 2055 CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAATGATTTGAT 2114
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2034 CAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCGGGATGTCCTCGAAACGATTTGAT 2093
Query 2115 GACTGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGT 2174
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 2094 GACGGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGT 2153
Query 2175 GTATGATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCTGAGTTC 2234
||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 2154 GTACGATGACGATGACTTCAGTTTGAAGTTTAAGTGGTCAAGACCGGCAAAGCTAAGCTC 2213
Query 2235 GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCCGGAGTTTATAG 2294
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2214 GGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCGGGAGTTTATAG 2273
Query 2295 AATAAGACATTATGGAGCTTCTAAGTCGTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC 2354
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2274 AATAAGACATTATGGAGCTTCTAAGTCCTTGTTTGGATCCATTAGTAGCTTCTCTGGTTC 2333
Query 2355 TTCTAGTGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAACAAAAAGAGAA 2414
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2334 TTCTAGCGCCTTTGTAGTTGTATGACATACTATTGTATACTTTATGAAATAAAAAGAGAA 2393
Query 2415 GAAAAGAGATTTGA 2428
||||||||||||||
Sbjct 2394 GAAAAGAGATTTGA 2407
> Ahg344410 jgi|Araly1|344410|fgenesh1_pg.C_scaffold_4000752
Length=492
Score = 226 bits (122), Expect = 6e-58
Identities = 154/169 (91%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 2062 GGTC-AACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAA-TGATTTGATGACTG 2119
|||| ||| |||||| || ||||||||||| |||||||||||||| | ||| ||||| |
Sbjct 292 GGTCTAAC-AGTTAATGCTACGTTTTGGTCGGGATGTCCTCGAAACT-ATTCGATGAAGG 349
Query 2120 AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGTGTATG 2179
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 350 AAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGTTCCAGTGTATG 409
Query 2180 ATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCT 2228
| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 410 ACGACGATGACTTCAGTTTGAAGTTGAAGTGGTCGAGACCGGCCAAGCT 458
Score = 139 bits (75), Expect = 9e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1834 GCCTCAACGTTATACGGACGACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA 1893
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCCTCAACGCTATATGGACCACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTA 273
Query 1894 GCCACAGCTTTAGTTAACGGTCTAACA 1920
||||||||||| |||||||||||||||
Sbjct 274 GCCACAGCTTTGGTTAACGGTCTAACA 300
Score = 121 bits (65), Expect = 3e-26
Identities = 85/95 (89%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1659 AGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTTCTCATTTC 1718
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 117 AGAGTTCACTACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTCCTCATCTC 176
Query 1719 TTCGGACCCCAAGGAATTCAGCAACAACATGCATG 1753
|| |||| ||| ||||| ||||||| |||||||
Sbjct 177 TTTGGACAGCAAAGAATTTGGCAACAATATGCATG 211
Score = 56.5 bits (30), Expect = 9e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 2252 TTGAGTGGAGGGTACCGGAATCTGCGGTAG 2281
||||||||||||||||||||||||||||||
Sbjct 463 TTGAGTGGAGGGTACCGGAATCTGCGGTAG 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92064122165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5