BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38025.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482809 jgi|Araly1|482809|fgenesh2_kg.4__1869__AT2G38025.1 1146 0.0
> Ahg482809 jgi|Araly1|482809|fgenesh2_kg.4__1869__AT2G38025.1
Length=820
Score = 1146 bits (620), Expect = 0.0
Identities = 686/718 (96%), Gaps = 3/718 (0%)
Strand=Plus/Plus
Query 42 ATGGAGCTCAAATCTTCTTCCAACAATAACATTCTAGAGCAGCTGAGAAATGGCTTCGCT 101
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGGAGCTCAAATCTTCTTCCAACAATAACATTCTTGAGCAGCTGAGAAATGGGTTCGCT 60
Query 102 AGATTCGAGCTTGTTTCTTCTCCTACTGCTTCTGTGTCAGATTCAATATCTTCCACTTCA 161
||||||||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct 61 CGATTCGAGCTTGTTTCTTCCCCTACTGCTTCTATTTCAGATTCAATCTCCTCCACTTCA 120
Query 162 CTCCCTGCTTCATTCATAAGCACAACGAAGGGAAATAGTTATGTGTTCTTCGCCAGAATC 221
|||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTCCCCGCTTCATTCATGAGCGCAACGAAGGGAAATAGCTATGTGTTCTTCGCCAGAATC 180
Query 222 AATTCCTCGATGAATCGGTCTCCTGCAGCGAAAAAGGTTGAGAAGTATGCTGTGGATAGA 281
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GGTTCCTCGATGAATCGGTCTCCTGCAGCGAAAAAGGTTGAGCAGTATGCTGTGGATAGA 240
Query 282 GTTAAAGGGGATGGGAGATGTCTGTTTCGAGCATTGGTGAAAGGAATGGCCTTTAATAAG 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTAAAGGGGATGGGAGATGTCTGTTTCGAGCATTGGTGAAAGGAATGGCCTTTAATAAG 300
Query 342 GGTATTACTCTTAACCCCCAACGAGAGAGAGATGATGCAGATGAGTTACGAATGGCTGTG 401
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTATTATTCTAAACCCCCAACGAGAGAGAGATGATGCAGATGAGTTACGAATGGCTGTG 360
Query 402 AAAGAGGTTATATGCAATGACCCCAAGGAAAGGGAGAAGTACAAAGAAGCTTTAGTGGCT 461
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAAGAGGTTATATGCAATGATCCCAAGGAAAGGGACAAGTACAAAGAAGCTTTAGTGGCT 420
Query 462 ATCACTGTGGATGAGTCTCTGAAACGCTTTTGCCAGCGGATTGGAAGACACGATTTCTGG 521
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 ATCACTGTGGATGAGTCTCTGAAACGCTATTGCCAGCGGATTGGAAGACACGATTTCTGG 480
Query 522 GGAGGAGAGTCCGAGCTGCTAGTTCTCTCCAAGCTATGTAAACAGCCTATCATCGTCTAC 581
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 481 GGAGGAGAGTCCGAGCTACTAGTTCTTTCTAAGCTATGTAAACAGCCTATCATCGTCTAC 540
Query 582 ATACCTGAGCACGAGCATGGAAGAGGAGGAGGGTATGGGCCGGGTTTTATACCGATTCAA 641
||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 541 ATACCCGAGCACGAGCATGG-A-A-GAGGAGGGTATGGGCCGGGTTTTATACCGATTCAA 597
Query 642 GAGTATGGAAGTGAATTTCGAGGAGGCTGGGGAAAGGGGAAGACAAACAAGAATGTTGTT 701
||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 598 GAGTATGGAGGTGAGTTTCGAGGAGGATGGGGAAAAGGGAAGACAAACAAGAATGTTGTT 657
Query 702 AGGCTTCTTTACAGTGGTAGAAACCACTATGATTTGCTTCGTTGACCAAAtttttttt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGGCTTCTTTACAGTGGTAGAAACCACTATGATTTGCTTCGTTGACCAAATTTTTTTT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5