BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38040.1
Length=2963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482810 jgi|Araly1|482810|fgenesh2_kg.4__1870__AT2G38040.2 4309 0.0
> Ahg482810 jgi|Araly1|482810|fgenesh2_kg.4__1870__AT2G38040.2
Length=2884
Score = 4309 bits (2333), Expect = 0.0
Identities = 2707/2880 (94%), Gaps = 56/2880 (2%)
Strand=Plus/Plus
Query 36 TTGTTTCCCAATCTGCATAAGAAATATCGAAACACTTCCACACAAAATCCACGCGCTCTC 95
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTGTTTCCCAATCTGCATAAGAAATATCGAAACACTTCCACACAAAATCCA--CG----- 53
Query 96 TCACGCTCACTCACTCGCATAACACTTGTTCCTTCTTCTCTCAATTTCAAAAAACGACGA 155
||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||
Sbjct 54 ---CGCTCACTCACTCGCATAACACTTGTT-C--CTTCTCTCAATTTC-AAATACGACGA 106
Query 156 tctcttcgatgctttctcttcc--t-tcctccttcatttccttctgactctgctcttc-- 210
|||||||||||||| ||||||| | |||| ||||||| |||||||| |||| | ||
Sbjct 107 TCTCTTCGATGCTTGCTCTTCCTTTCTCCTTCTTCATTCCCTTCTGATTCTG-TGATCGA 165
Query 211 ttcttcgtc-ttggatcttcGAATTTGTCTTTGTGATTTGAGT--GTTATAGAATAAAGA 267
| || | | || |||| | |||||||||| || ||||| | ||| || ||| | |
Sbjct 166 TGATT-G-CTTTTGATC-T--AATTTGTCTTGGT-ATTTG-TTCATTTAGAGGATACATA 218
Query 268 TCTGTTTGGAGTGGATCCATTC--AAGTAATTGAAGAACTCAACGCAAAAAATGGCTTCA 325
|||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct 219 TCTGTTTGGAGTGGATCCATTCAAAAGTAATTGAAGAAATCAACTCAAAGAATGGCTTCA 278
Query 326 ATATCGCATTCATCACTAGCTTTAGGAGGAGCTTCTTCTGCTTCTGCTTCAGATTACTTG 385
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 279 ATATCTCATTCATCACTAGCATTAGGAGGAGCTTCTTCTGCTTCTGCTTCGGATTACTTG 338
Query 386 CGTAGTTCGAGCAATGGTGTTAATGGGGTACCATTGAAAACCTTAGGAAGAGCAGTGTTT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CGTAGTTCGAGCAATGGTGTTAATGGGGTACCATTGAAAACCTTAGGAAGAGCAGTGTTT 398
Query 446 ACTACCATCAGGAGGAAGGACTTGGCGGTGACATCTCGGCTCAAGAAAGGGAAGAAATTT 505
|||||||| || ||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 399 ACTACCATTAGAAGGAAGGACCTGGCGGTGACATCTAGGCTCAAGAAAGGTAAGAAATTT 458
Query 506 GAGCATCCATGGCCTGCAAATCCTGACCCGAATGTGAAAGGAGGAGTCTTGTCTTACCTG 565
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 459 GAGCATCCATGGCCTGCGAATCCTGACCCGAATGTGAAAGGAGGAGTCTTGTCGTATCTG 518
Query 566 GCCGAGTTCAAACCATTGGGGGATACTCAAAAGCCTGTCACTTTGGATTTCGAGAAGCCA 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 519 TCCGAGTTCAAACCTTTGGGGGATACTCAAAAGCCTGTCACTTTGGATTTCGAGAAACCA 578
Query 626 CTAGTCGAATTGGAGAAGAAGATTGTTGATGTGAGGAAGATGGCGAATGAAACGGGGTTG 685
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 579 CTAGTCGAATTGGAGAAGAAGATTGTCGATGTGAGGAAGATGGCGAATGAAACCGGGTTA 638
Query 686 GATTTCACTGAGCAGATTATCACTTTGGAGAACAAGTATAGACAGGCACTGAAAGATCTT 745
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GACTTCACTGAGCAGATTATCACTTTGGAGAACAAGTATAGACAGGCACTGAAAGATCTT 698
Query 746 TACACGCATCTTACTCCGATACAACGTGTGAACATTGCGCGCCATCCCAACCGACCTACT 805
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TACACGCATCTCACTCCAATACAACGTGTGAACATTGCGCGCCATCCCAACCGACCTACT 758
Query 806 TTCCTTGATCATATACATAACATAACTGACAAGTTTATGGAGCTTCATGGAGACCGAGCG 865
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 759 TTCCTTGATCATATACATAACATCACTGACAAGTTTATGGAGCTTCATGGAGACCGAGCG 818
Query 866 GGGTATGATGACCCTGCAATTGTGACGGGTATTGGAACCATAGATGGAAAACGTTACATG 925
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 819 GGGTATGATGACCCTGCAATTGTGACCGGTATTGGAACCATCGATGGAAAACGTTACATG 878
Query 926 TTCATAGGTCACCAGAAAGGTAGAAACACCAAAGAAAATATAATGCGGAACTTTGGTATG 985
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 879 TTCATAGGTCACCAGAAAGGTAGAAACACCAAAGAAAATATAATGCGTAACTTTGGTATG 938
Query 986 CCTACTCCTCACGGATATAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGGT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CCTACTCCTCACGGATATAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGGT 998
Query 1046 TTTCCAATCGTGACATTTATCGACACTCCTGGAGCCTATGCAGATCTTAAATCCGAGGAA 1105
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 999 TTTCCTATCGTGACATTCATCGACACTCCTGGAGCCTATGCAGACCTTAAATCCGAGGAA 1058
Query 1106 CTTGGACAGGGTGAAGCGATTGCCAACAATCTGAGGACGATGTTCGGCCTGAAAGTGCCA 1165
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1059 CTCGGACAGGGTGAAGCGATTGCCAACAATCTGAGGACGATGTTTGGCCTGAAAGTGCCA 1118
Query 1166 ATTCTTTCTATTGTCATTGGGGAAGGTGGTTCTGGTGGTGCCCTAGCCATTGGCTGTGCG 1225
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1119 ATTCTTTCTATTGTCATTGGGGAAGGTGGTTCTGGTGGTGCTTTAGCCATTGGCTGTGCT 1178
Query 1226 AATAAAATGCTGATGCTCGAAAACGCAGTTTTCTATGTTGCCAGTCCAGAGGCATGTGCA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1179 AATAAAATGCTGATGCTCGAAAACGCAGTTTTCTATGTTGCCAGTCCAGAGGCCTGTGCA 1238
Query 1286 GCGATCTTGTGGAAGACTTCTAAGGCTGCTCCTGAGGCTGCTGAAAAGCTTAGAATTACC 1345
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GCGATTTTGTGGAAGACTTCCAAGGCTGCTCCTGAGGCTGCTGAAAAGCTTAGAATTACC 1298
Query 1346 TCCAAGGAGCTGGTCAAGCTTAATGTAGCTGATGGAATCATTCCTGAACCGCTTGGAGGG 1405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1299 TCCAAGGAGCTGGTCAAGCTTAATGTAGCTGATGGAATCATTCCTGAACCGCTTGGCGGG 1358
Query 1406 GCCCATGCCGATCCTTCATGGACGTCGCAGCAAATAAAGATTGCTATCAATGAAAACATG 1465
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1359 GCCCATGCTGATCCTTCATGGACGTCGCAGCAGATAAAGATTGCTATCAATGAAAACATG 1418
Query 1466 AATGAATTCGGAAAAATGAGTGGGGAGGAGCTCCTGAAACACAGGATGGCTAAGTACCGA 1525
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1419 AATGAATTCGGAAAAATGAGTGGGGAGGAGCTCCTGAAGCACAGGATGGCTAAGTACCGA 1478
Query 1526 AAGATTGGAGTGTTCATAGAGGGCGAACCAATAGAGCCAAGTAGGAAAATCAACATGAAG 1585
|||||||||||||||||||| || ||| |||||||||| ||||||||| |||||||||||
Sbjct 1479 AAGATTGGAGTGTTCATAGAAGGTGAAACAATAGAGCCGAGTAGGAAAGTCAACATGAAG 1538
Query 1586 AAAAGGGAAGCCGTGTTCTCAGATAGCCGGAAGCTGCAGGGTGAGGTTGACAAGCTGAAG 1645
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1539 AAGAGGGAAGCCGTGTTCTCAGATAGCCGGAAGCTGCAGGGGGAGGTTGACAAGCTGAAG 1598
Query 1646 GAGCAGATTCTGAAAGCCAAGGAGACGTCTACGGAAGCCGAGCCTTCGAGTGAAGTTCTT 1705
|||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1599 GAGCAGATTCTGAAAGCCAAGGAGACGTCTTCAGAAGACGAGCCTTCGAGTGAAGTTCTT 1658
Query 1706 AATGAGATGATTGAGAAACTCAAATCCGAGATAGATGACGAGTACACTGAAGCTGCAATA 1765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1659 AATGAGATGATTGAGAAACTCAAATCCGAGATAGATGACGAGTACACTGAAGCTGCCATT 1718
Query 1766 GCAGTAGGTTTGGAGGAGAGACTAACGGCAATGCGCGAAGAGTTCTCGAAAGCGAGTTCA 1825
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1719 GCAGTAGGTTTGGAGGAGAGACTAACGGCGATGCGCGAAGAGTTCTCGAAAGCAAGTTCA 1778
Query 1826 GAAGAGCACCTTATGCACCCGGTTCTGATCGAGAAAATTGAGAAGCTCAAGGAAGAATTC 1885
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1779 GAGGAGCATCTTATGCACCCGGTTCTGATCGAGAAAATTGAGAAGCTCAAGGAAGAGTTC 1838
Query 1886 AATACCCGTTTGACTGACGCACCTAACTACGAGAGCCTAAAATCTAAGCTTAACATGCTT 1945
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AATACCCGTTTGATTGACGCGCCTAACTACGAGAGCCTAAAATCTAAGCTTAACATGCTG 1898
Query 1946 AGGGACTTTTCCAGAGCCAAAGCAGCATCAGAAGCTACTTCATTGAAAAAGGAGATCAAT 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 AGGGACTTTTCCAGAGCCAAAGCAGCATCAGAAGCTACTTCATTGAAAAAGGAGATCAAT 1958
Query 2006 AAGCGGTTCCAGGAAGCTGTAGACCGCCCAGAAATTAGAGAAAAGGTCGAGGCAATCAAA 2065
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1959 AAGCGGTTCCAGGAAGCTGTAGACCGTCCTGAAATTAGAGAAAAGGTTGAGGCAATCAAA 2018
Query 2066 GCTGAGGTCGCGAGCTCAGGAGCTTCTTCTTTTGACGAGTTACCTGATGCACTGAAAGAA 2125
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2019 GCTGAGGTCGCGAGCTCAGGAGCTTCATCTTTTGACGAGTTACCTGATGCATTGAAAGAA 2078
Query 2126 AAAGTTCTGAAGACTAAAGGGGAGGTCGAAGCAGAGATGGCGGGTGTGTTAAAGTCAATG 2185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 AAAGTTCTGAAGACTAAAGGGGAGGTCGAAGCAGAGATGGCGGGTGTGTTAAAGTCAATG 2138
Query 2186 GGTCTGGAGCTTGACGCTGTTAAACAGAATCA-GAAGGATACGGCTGAGCAGATCTATGC 2244
|||||||||||||| ||||| |||| |||| | ||||||| |||||||||||| || |||
Sbjct 2139 GGTCTGGAGCTTGATGCTGTGAAACTGAAT-ATGAAGGATCCGGCTGAGCAGACCTTTGC 2197
Query 2245 CGCAAACGAAAACCTTCAAGAAAAACTTGAAAAGCTGAACCAAGAAATCACCAGCAAGAT 2304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2198 CGCAAACGAAAACCTTCAAGAAAAACTTGAAAAGCTGAACCAAGAAATCACCAACAAGAT 2257
Query 2305 TG-AGGAGGTGGTGAGGACACCAGAGATCAAGAGCATGGTGGAGTTGCTGAAAGTGGAAA 2363
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2258 TGCAG-AGGTGGTGAGGACACCAGAGATCAAGAGCATGGTCGAGTTGCTGAAAGTGGAAA 2316
Query 2364 CCGCAAAGGCGAGCAAAACGCCTGGTGTCACCGAAGCATATCAGAAAATCGAGGCACTTG 2423
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2317 CCGCAAAGGCGAGCAAAACCCCTGGTGTCACCGAAGCATATCAGAAGATCGAGGCACTTG 2376
Query 2424 AGCAGCAGATCAAGCAGAAGATTGCAGAGGCTCTGAACACGTCCGGACTGCAGGAAAAGC 2483
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 2377 AGCAGCAGATCAAGCAGAAGATTGCAGAGGCTCTGAACATGTCCGGACTGCAAGAAAAGC 2436
Query 2484 AAGACGAGCTCGAGAAGGAGCTTGCAGCTGCACGTGAACTAGCTGCAGAGGAATCAGACG 2543
|||| ||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2437 AAGAGGAGCTGGAAAAGGAGATTGCAGCTGCACGTGAACTAGCTGCAGAGGAATCAGACG 2496
Query 2544 GGAGTGTGAAGGAAGATGATGACGATGACGAAGATAGTTCAGAATCCGGGAAATCGGAGA 2603
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2497 GGAGTGTGAAGGAAGATGACGACGACGACGAAGATAGTTCAGAATCCGGGAAATCGGAGA 2556
Query 2604 TGGTTAACCCCAGCTTCGCCTGAAGCACAAAACAAGACATTGTTT----G-A---TCTTG 2655
||||||||||||||||||||| ||||||||||||||||||||||| | | |||||
Sbjct 2557 TGGTTAACCCCAGCTTCGCCTAAAGCACAAAACAAGACATTGTTTACTCGCAGGATCTTG 2616
Query 2656 AAGCTCTTTCGATATCCCCGGTAAAGAGGCTAT--CCTCCATGATCTGAAGCA--GAGA- 2710
||||||||| ||| |||| |||||||||||||| |||||| ||||||||||| ||||
Sbjct 2617 AAGCTCTTTTGATTTCCCTGGTAAAGAGGCTATATCCTCCACGATCTGAAGCAAAGAGAA 2676
Query 2711 ---GATAAACTATAGTGGAGGAACAGCAACTTAAAAAACCTTGCTTTTGTCTAGTT-AGC 2766
|||||||| |||||||||||||||||||||| | ||||||||| ||||||| |||
Sbjct 2677 ACAGATAAACTCCAGTGGAGGAACAGCAACTTAAAGA-CCTTGCTTTC-TCTAGTTTAGC 2734
Query 2767 TTCTGGAACATGATTTCTGGATTGGAACAAGCGTTTGAAGTTGACTTTTGTCTTTGGATT 2826
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2735 TTCAGGAACATGATATCTGGATTGGAACAAGCGTTTGAAGTTAACTTTTGTCTTTGGATT 2794
Query 2827 CATTTCTGTATTGTTATGTCTTATTTTGTTAGAACACTAGTTTT-GTCTTTGACATACGT 2885
||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 2795 CATTTATGTATTGTTATGTCTTGTTTCGTTAGAACACTAGTTTTTGTCTTTGACATACGT 2854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111871049565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5