BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38050.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901715 jgi|Araly1|901715|Al_scaffold_0004_2365 1110 0.0
> Ahg901715 jgi|Araly1|901715|Al_scaffold_0004_2365
Length=786
Score = 1110 bits (601), Expect = 0.0
Identities = 730/792 (92%), Gaps = 9/792 (1%)
Strand=Plus/Plus
Query 138 ATGGAAGAAATCGCCGATAAAACCTTCTTCCGA-TACTGTCTCCTCACTCTTATTTTCGC 196
|||||||| ||||||||| |||||||||||| | |||||||||||||| || |||||| |
Sbjct 1 ATGGAAGAGATCGCCGATCAAACCTTCTTCC-ACTACTGTCTCCTCACCCTAATTTTCTC 59
Query 197 CGGCCCACCAACCGCCGTC-CTTCTGAAATTCCTCCAAGCTCCTTACGGTAAACACAACC 255
||| ||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 60 CGGTCCACCTACCGCCGTCGC-TCTGAAATTCCTCCAAGCTCCTTACGGAAAACACAACC 118
Query 256 GTACCGGATGGGGTCCCACCGTATCTCCACCGATTGCTTGGTTCGTCATGGAGAGCCCAA 315
||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 GTAGAGGATGGGGTCCAACCGTATCTCCGCCGATTGCTTGGTTCGTCATGGAGAGCCCAA 178
Query 316 CCTTGTGGCTCACTCTCCTCCTCTTCCCCTTTGGTCGTCACGCTCTCAACCCTAAATCTC 375
||||||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 179 CCTTGTGGCTCACACTTCTCATCTTTCCCTTTGGTCGTCACGCTCTCAATCCTAAATCTC 238
Query 376 TACTTCTATTCTCTCCTTATCTCATTCATTACTTCCACCGCACCATCATTTACCCTCTTC 435
| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| |
Sbjct 239 TCCTTCTCTTCTCTCCTTATCTCCTCCATTACTTCCACCGTACCATCATTTACCCTCTCC 298
Query 436 GCCTCTTCCGCAGCTCCTTCCCCGCCGGTAAAAACGGATTTCCGATCACCATCGCCGCCT 495
||||||||||||||||| | |||| || |||||||| ||||||||||||||||||| ||
Sbjct 299 GCCTCTTCCGCAGCTCC-T--CCGCTGGGAAAAACGGGTTTCCGATCACCATCGCCG-CT 354
Query 496 -TGGCTTTCACCTTTAATCTCCTCAATGGTTATATCCAGGCGAGGTGGGTTTCGCATTAC 554
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 355 ATGGCTTTCACCTTTAATCTCCTCAACGCTTATATCCAGGCGAGGTGGGTTTCGCATTAT 414
Query 555 AAGGATGACTACGAAGACGGAAACTGGTTCTGGTGGCGGTTTGTTATCGGTATGGTGGTT 614
||||| ||||||||||||||||| |||||||||||| ||||| | || ||||||||||||
Sbjct 415 AAGGACGACTACGAAGACGGAAAGTGGTTCTGGTGGAGGTTTATCATTGGTATGGTGGTT 474
Query 615 TTCATAACCGGCATGTATATAAATATCACGTCGGACCGGACTTTGGTACGATTGAAGAAA 674
|| || |||| |||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 475 TTTGTAGCCGGTATGTATATTAATATCACATCGGACCGGACTTTGGTACGAATGAAGAAA 534
Query 675 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGTTGGTAAGCTGTCCG 734
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 535 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGCTCGTTAGCTGTCCG 594
Query 735 AATTATTTTGGAGAGGCGATTGAGTGGTTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 794
||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 AATTACTTTGGAGAGGTGATTGAGTGGCTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 654
Query 795 GGTATTGGATTTTTTCTGTACACGTGTTCCAATTTGTTTCCGCGTGCACGTGCGAGTCAC 854
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 655 GGTATTGGATTTTTTCTGTACACGTGTTCTAATTTGATTCCGCGTGCACGTGCGAGTCAC 714
Query 855 AAGTGGTACATTGCCAAGTTCAAGGAAGAGTATCCCAAGACTCGTAAAGCTGTTATTCCT 914
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 715 AAGTGGTACATTGACAAGTACAAGGAAGAGTATCCCAAGACTCGTAGAGCTGTTATTCCT 774
Query 915 TTTGTGTACTGA 926
||||||||||||
Sbjct 775 TTTGTGTACTGA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5