BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38050.1 Length=1093 Score E Sequences producing significant alignments: (Bits) Value Ahg901715 jgi|Araly1|901715|Al_scaffold_0004_2365 1110 0.0 > Ahg901715 jgi|Araly1|901715|Al_scaffold_0004_2365 Length=786 Score = 1110 bits (601), Expect = 0.0 Identities = 730/792 (92%), Gaps = 9/792 (1%) Strand=Plus/Plus Query 138 ATGGAAGAAATCGCCGATAAAACCTTCTTCCGA-TACTGTCTCCTCACTCTTATTTTCGC 196 |||||||| ||||||||| |||||||||||| | |||||||||||||| || |||||| | Sbjct 1 ATGGAAGAGATCGCCGATCAAACCTTCTTCC-ACTACTGTCTCCTCACCCTAATTTTCTC 59 Query 197 CGGCCCACCAACCGCCGTC-CTTCTGAAATTCCTCCAAGCTCCTTACGGTAAACACAACC 255 ||| ||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||| Sbjct 60 CGGTCCACCTACCGCCGTCGC-TCTGAAATTCCTCCAAGCTCCTTACGGAAAACACAACC 118 Query 256 GTACCGGATGGGGTCCCACCGTATCTCCACCGATTGCTTGGTTCGTCATGGAGAGCCCAA 315 ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 119 GTAGAGGATGGGGTCCAACCGTATCTCCGCCGATTGCTTGGTTCGTCATGGAGAGCCCAA 178 Query 316 CCTTGTGGCTCACTCTCCTCCTCTTCCCCTTTGGTCGTCACGCTCTCAACCCTAAATCTC 375 ||||||||||||| || ||| |||| ||||||||||||||||||||||| |||||||||| Sbjct 179 CCTTGTGGCTCACACTTCTCATCTTTCCCTTTGGTCGTCACGCTCTCAATCCTAAATCTC 238 Query 376 TACTTCTATTCTCTCCTTATCTCATTCATTACTTCCACCGCACCATCATTTACCCTCTTC 435 | ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||| | Sbjct 239 TCCTTCTCTTCTCTCCTTATCTCCTCCATTACTTCCACCGTACCATCATTTACCCTCTCC 298 Query 436 GCCTCTTCCGCAGCTCCTTCCCCGCCGGTAAAAACGGATTTCCGATCACCATCGCCGCCT 495 ||||||||||||||||| | |||| || |||||||| ||||||||||||||||||| || Sbjct 299 GCCTCTTCCGCAGCTCC-T--CCGCTGGGAAAAACGGGTTTCCGATCACCATCGCCG-CT 354 Query 496 -TGGCTTTCACCTTTAATCTCCTCAATGGTTATATCCAGGCGAGGTGGGTTTCGCATTAC 554 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 355 ATGGCTTTCACCTTTAATCTCCTCAACGCTTATATCCAGGCGAGGTGGGTTTCGCATTAT 414 Query 555 AAGGATGACTACGAAGACGGAAACTGGTTCTGGTGGCGGTTTGTTATCGGTATGGTGGTT 614 ||||| ||||||||||||||||| |||||||||||| ||||| | || |||||||||||| Sbjct 415 AAGGACGACTACGAAGACGGAAAGTGGTTCTGGTGGAGGTTTATCATTGGTATGGTGGTT 474 Query 615 TTCATAACCGGCATGTATATAAATATCACGTCGGACCGGACTTTGGTACGATTGAAGAAA 674 || || |||| |||||||| |||||||| ||||||||||||||||||||| |||||||| Sbjct 475 TTTGTAGCCGGTATGTATATTAATATCACATCGGACCGGACTTTGGTACGAATGAAGAAA 534 Query 675 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGTTGGTAAGCTGTCCG 734 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 535 GAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGCTCGTTAGCTGTCCG 594 Query 735 AATTATTTTGGAGAGGCGATTGAGTGGTTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 794 ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 595 AATTACTTTGGAGAGGTGATTGAGTGGCTGGGCTGGGCTGTTATGACTTGGTCTTGGGCC 654 Query 795 GGTATTGGATTTTTTCTGTACACGTGTTCCAATTTGTTTCCGCGTGCACGTGCGAGTCAC 854 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 655 GGTATTGGATTTTTTCTGTACACGTGTTCTAATTTGATTCCGCGTGCACGTGCGAGTCAC 714 Query 855 AAGTGGTACATTGCCAAGTTCAAGGAAGAGTATCCCAAGACTCGTAAAGCTGTTATTCCT 914 ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 715 AAGTGGTACATTGACAAGTACAAGGAAGAGTATCCCAAGACTCGTAGAGCTGTTATTCCT 774 Query 915 TTTGTGTACTGA 926 |||||||||||| Sbjct 775 TTTGTGTACTGA 786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40715275356 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5