BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38060.1
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482813 jgi|Araly1|482813|fgenesh2_kg.4__1873__AT2G38060.1 2320 0.0
> Ahg482813 jgi|Araly1|482813|fgenesh2_kg.4__1873__AT2G38060.1
Length=1572
Score = 2320 bits (1256), Expect = 0.0
Identities = 1465/1563 (94%), Gaps = 25/1563 (2%)
Strand=Plus/Plus
Query 12 AGGATCCCTGAAACCTCTGCACCATTCCTCATGTTCATCGAGTTTCCCTCGGAATCCGAT 71
|||||| || |||| |||||| ||||| |||||||||| |||||||| ||||||||| ||
Sbjct 18 AGGATCTCTAAAACTTCTGCAACATTCGTCATGTTCATTGAGTTTCCATCGGAATCCAAT 77
Query 72 CGTAAACC-GGAAAGCCCTTCTTG-GTTTTGTGTTTGATTCTGCCCGGAAAAACCAGATT 129
|| |||| ||||||||||| || |||| | ||||| || |||||||||| ||||||
Sbjct 78 CG-CAACCAAGAAAGCCCTTC-TGCGTTTCGGGTTTG-GTC--CCCGGAAAAATCAGATT 132
Query 130 CGATGTGAGAATTTACGATATTCATCGGAAAGCGATGGGAAGAGAAGA----A------- 178
|||||||| ||||||| | |||||||||||||||||||||||||||| |
Sbjct 133 CGATGTGATAATTTACTTTCTTCATCGGAAAGCGATGGGAAGAGAAGAGGTGAGGCGGTG 192
Query 179 AT-GCGGCGGCGAAGAAGAGGAATCAATCCCCGGAAAGATGTGCGGCGGAGGG-AGTACT 236
| ||||||||||||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 193 GTGGCGGCGGCGAAGAAGAGGAATCAGTCGCCGGAAAGATGTGCGGCGGAGGGAAG-ACT 251
Query 237 GACCGGAGGAGGGGGGTCGGAGGCGATTGCGGAGGTGAGGACGATGATGCCTGAGAGGAT 296
|| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 252 GATCGGAGGAGGAGCGTCGGAGGCGATTACGGAGGTGAGGACGATGATGCCTGAGAGGAT 311
Query 297 TAAGGTAGTGATATTGACGGCGTGCATGATGTGTCTATGTAACGCCGACAGAGTTGTTAT 356
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 312 TAAGGTAGTGATATTGACCGCGTGCATGATGTGTCTGTGTAATGCCGACAGAGTTGTTAT 371
Query 357 GTCCGTCGCGGTGGTTCCACTCGCCGATAAGCTTGGCTGGTCGAGTTCTTTCTTAGGGGT 416
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 372 GTCCGTCGCGGTGGTTCCACTCGCCGACAAGCTTGGCTGGTCGAGTTCTTTCCTAGGGGT 431
Query 417 AGTTCAGTCCTCCTTCCTATGGGGTTACATTTTTTCATCCGTTATCGGAGGGGCATTGGT 476
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 432 AGTTCAGTCCTCCTTCCTATGGGGTTACATATTTTCATCGGTTATCGGAGGGGCATTGGT 491
Query 477 GGATCGGTATGGAGGAAAAAGAGTGTTGGCTTGGGGTGTGGCATTGTGGTCCTTAGCCAC 536
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 492 GGATCGGTATGGAGGGAAAAGAGTATTGGCTTGGGGAGTGGCATTGTGGTCCTTAGCCAC 551
Query 537 TCTACTCACTCCTTGGGCAGCTGCACACTCGACCTTAGCCTTATTGTGTGTCCGCGCCTT 596
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 552 TCTACTTACTCCTTGGGCAGCTGCCCACTCGACCTTTGCCTTATTGTGTGTCCGCGCCTT 611
Query 597 TTTTGGCCTCGCTGAAGGCGTTGCAATGCCCTCCATGACCACCCTACTCTCTCGGTGGTT 656
|||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||
Sbjct 612 TTTTGGCCTCGCTGAAGGTGTTGCATTGCCCTCTATGACGACCCTTCTCTCTCGGTGGTT 671
Query 657 TCCAATGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCACATGGGAAA 716
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 672 CCCAACGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCATATGGGAAA 731
Query 717 TGTTGTGGGACTTCTGTTGACGCCACTCATGTTATCTTCCATAGGAATCTCTGGTCCATT 776
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 732 TGTCGTGGGACTTCTGTTGACGCCACTCTTGTTATCTTCCATAGGAATCTCTGGTCCATT 791
Query 777 TATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCCACTTGGTCAAGCGGAGTTACAAA 836
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 792 CATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCTACTTGGTCAAGCGGCGTTACAAA 851
Query 837 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 911
Query 897 ACCAGTTCAACCGTCAACCATTTCGCCGAAACCAAACCCATCTTTGCGACTTCTTTTGTC 956
||| |||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 912 ACCGGTTCAACCATCAACCAATTCGACGAAACCAAACCCATCTTTACGACTTCTTTTGTC 971
Query 957 GAAATTGCCTACTTGGGCGATCATTTTTGCTAATGTGACTAACAACTGGGGATACTTTGT 1016
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 972 GAAATTGCCTACTTGGGCGATCATTTTAGCTAATGTGACTAACAACTGGGGATACTTTGT 1031
Query 1017 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTGAATTTGAAGCAAGC 1076
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1032 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTAAATTTGAAGCAAGC 1091
Query 1077 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGAGC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1092 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGTGC 1151
Query 1137 AGCATCGGACTTCTTGATAAGAACTGGTCACTCTGTAACCTCAGTACGAAAGATCATGCA 1196
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1152 AGCATCAGACTTCTTGATCAGAACTGGTCACTCTGTAACCTCAGTCCGAAAGATCATGCA 1211
Query 1197 ATCTATTGGATTTATGGGTCCCGGGCTGTCTCTGCTCTGCCTCAACTTCGC-AAAGTCGC 1255
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1212 GTCTATCGGATTTATGGGTCCTGGGCTATCTCTGCTCTGCCTCAACTTCGCTAAA-TCGC 1270
Query 1256 CTTCTTGTGCAGCGGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1315
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CTTCTTGTGCAGCAGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1330
Query 1316 GATTTCTCCTCAATATGCAAGACATCGCACCGCAATATGCTGGTTTCCTGCACGGTATTT 1375
| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1331 GGTTTCTCCTCAATATGCAAGATATCGCACCGCAATATGCTGGTTTCTTGCACGGTATTT 1390
Query 1376 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1450
Query 1436 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTTACGGCCTTTCTTTACTTTGCAACCA 1495
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1451 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTAACGGCGTTTCTTTACTTTGCAACCA 1510
Query 1496 CCGTGTTTTGGCTCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAACG-CTCTC 1554
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1511 CCGTGTTTTGGATCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAA-GACTCTC 1569
Query 1555 CTT 1557
|||
Sbjct 1570 CTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64105882335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5