BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G38060.1 Length=1709 Score E Sequences producing significant alignments: (Bits) Value Ahg482813 jgi|Araly1|482813|fgenesh2_kg.4__1873__AT2G38060.1 2320 0.0 > Ahg482813 jgi|Araly1|482813|fgenesh2_kg.4__1873__AT2G38060.1 Length=1572 Score = 2320 bits (1256), Expect = 0.0 Identities = 1465/1563 (94%), Gaps = 25/1563 (2%) Strand=Plus/Plus Query 12 AGGATCCCTGAAACCTCTGCACCATTCCTCATGTTCATCGAGTTTCCCTCGGAATCCGAT 71 |||||| || |||| |||||| ||||| |||||||||| |||||||| ||||||||| || Sbjct 18 AGGATCTCTAAAACTTCTGCAACATTCGTCATGTTCATTGAGTTTCCATCGGAATCCAAT 77 Query 72 CGTAAACC-GGAAAGCCCTTCTTG-GTTTTGTGTTTGATTCTGCCCGGAAAAACCAGATT 129 || |||| ||||||||||| || |||| | ||||| || |||||||||| |||||| Sbjct 78 CG-CAACCAAGAAAGCCCTTC-TGCGTTTCGGGTTTG-GTC--CCCGGAAAAATCAGATT 132 Query 130 CGATGTGAGAATTTACGATATTCATCGGAAAGCGATGGGAAGAGAAGA----A------- 178 |||||||| ||||||| | |||||||||||||||||||||||||||| | Sbjct 133 CGATGTGATAATTTACTTTCTTCATCGGAAAGCGATGGGAAGAGAAGAGGTGAGGCGGTG 192 Query 179 AT-GCGGCGGCGAAGAAGAGGAATCAATCCCCGGAAAGATGTGCGGCGGAGGG-AGTACT 236 | ||||||||||||||||||||||| || ||||||||||||||||||||||| || ||| Sbjct 193 GTGGCGGCGGCGAAGAAGAGGAATCAGTCGCCGGAAAGATGTGCGGCGGAGGGAAG-ACT 251 Query 237 GACCGGAGGAGGGGGGTCGGAGGCGATTGCGGAGGTGAGGACGATGATGCCTGAGAGGAT 296 || ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 252 GATCGGAGGAGGAGCGTCGGAGGCGATTACGGAGGTGAGGACGATGATGCCTGAGAGGAT 311 Query 297 TAAGGTAGTGATATTGACGGCGTGCATGATGTGTCTATGTAACGCCGACAGAGTTGTTAT 356 |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 312 TAAGGTAGTGATATTGACCGCGTGCATGATGTGTCTGTGTAATGCCGACAGAGTTGTTAT 371 Query 357 GTCCGTCGCGGTGGTTCCACTCGCCGATAAGCTTGGCTGGTCGAGTTCTTTCTTAGGGGT 416 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 372 GTCCGTCGCGGTGGTTCCACTCGCCGACAAGCTTGGCTGGTCGAGTTCTTTCCTAGGGGT 431 Query 417 AGTTCAGTCCTCCTTCCTATGGGGTTACATTTTTTCATCCGTTATCGGAGGGGCATTGGT 476 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 432 AGTTCAGTCCTCCTTCCTATGGGGTTACATATTTTCATCGGTTATCGGAGGGGCATTGGT 491 Query 477 GGATCGGTATGGAGGAAAAAGAGTGTTGGCTTGGGGTGTGGCATTGTGGTCCTTAGCCAC 536 ||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 492 GGATCGGTATGGAGGGAAAAGAGTATTGGCTTGGGGAGTGGCATTGTGGTCCTTAGCCAC 551 Query 537 TCTACTCACTCCTTGGGCAGCTGCACACTCGACCTTAGCCTTATTGTGTGTCCGCGCCTT 596 |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 552 TCTACTTACTCCTTGGGCAGCTGCCCACTCGACCTTTGCCTTATTGTGTGTCCGCGCCTT 611 Query 597 TTTTGGCCTCGCTGAAGGCGTTGCAATGCCCTCCATGACCACCCTACTCTCTCGGTGGTT 656 |||||||||||||||||| |||||| ||||||| ||||| ||||| |||||||||||||| Sbjct 612 TTTTGGCCTCGCTGAAGGTGTTGCATTGCCCTCTATGACGACCCTTCTCTCTCGGTGGTT 671 Query 657 TCCAATGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCACATGGGAAA 716 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 672 CCCAACGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCATATGGGAAA 731 Query 717 TGTTGTGGGACTTCTGTTGACGCCACTCATGTTATCTTCCATAGGAATCTCTGGTCCATT 776 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 732 TGTCGTGGGACTTCTGTTGACGCCACTCTTGTTATCTTCCATAGGAATCTCTGGTCCATT 791 Query 777 TATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCCACTTGGTCAAGCGGAGTTACAAA 836 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 792 CATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCTACTTGGTCAAGCGGCGTTACAAA 851 Query 837 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 911 Query 897 ACCAGTTCAACCGTCAACCATTTCGCCGAAACCAAACCCATCTTTGCGACTTCTTTTGTC 956 ||| |||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||| Sbjct 912 ACCGGTTCAACCATCAACCAATTCGACGAAACCAAACCCATCTTTACGACTTCTTTTGTC 971 Query 957 GAAATTGCCTACTTGGGCGATCATTTTTGCTAATGTGACTAACAACTGGGGATACTTTGT 1016 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 972 GAAATTGCCTACTTGGGCGATCATTTTAGCTAATGTGACTAACAACTGGGGATACTTTGT 1031 Query 1017 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTGAATTTGAAGCAAGC 1076 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1032 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTAAATTTGAAGCAAGC 1091 Query 1077 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGAGC 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1092 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGTGC 1151 Query 1137 AGCATCGGACTTCTTGATAAGAACTGGTCACTCTGTAACCTCAGTACGAAAGATCATGCA 1196 |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1152 AGCATCAGACTTCTTGATCAGAACTGGTCACTCTGTAACCTCAGTCCGAAAGATCATGCA 1211 Query 1197 ATCTATTGGATTTATGGGTCCCGGGCTGTCTCTGCTCTGCCTCAACTTCGC-AAAGTCGC 1255 ||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| Sbjct 1212 GTCTATCGGATTTATGGGTCCTGGGCTATCTCTGCTCTGCCTCAACTTCGCTAAA-TCGC 1270 Query 1256 CTTCTTGTGCAGCGGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1315 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1271 CTTCTTGTGCAGCAGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1330 Query 1316 GATTTCTCCTCAATATGCAAGACATCGCACCGCAATATGCTGGTTTCCTGCACGGTATTT 1375 | |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1331 GGTTTCTCCTCAATATGCAAGATATCGCACCGCAATATGCTGGTTTCTTGCACGGTATTT 1390 Query 1376 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1391 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1450 Query 1436 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTTACGGCCTTTCTTTACTTTGCAACCA 1495 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1451 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTAACGGCGTTTCTTTACTTTGCAACCA 1510 Query 1496 CCGTGTTTTGGCTCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAACG-CTCTC 1554 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1511 CCGTGTTTTGGATCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAA-GACTCTC 1569 Query 1555 CTT 1557 ||| Sbjct 1570 CTT 1572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64105882335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5