BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38070.1
Length=2204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482814 jgi|Araly1|482814|fgenesh2_kg.4__1874__AT2G38070.1 3092 0.0
> Ahg482814 jgi|Araly1|482814|fgenesh2_kg.4__1874__AT2G38070.1
Length=2170
Score = 3092 bits (1674), Expect = 0.0
Identities = 2047/2218 (92%), Gaps = 62/2218 (3%)
Strand=Plus/Plus
Query 1 CTCTTTCCTTTGTCACTATCCGTTGAGAACCCAAACGGctctctctcttgtctgactctc 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1 CTCTTTCCTTTGTCACTATCCGTTGAGAACCCAAACGG--CTCTCTCTTCTCTGA----- 53
Query 61 tctctctctctctctctcgatcggtcga-aattttctctgtaa-ctctcttctctctTTA 118
|| | |||||||| |||||||||| | ||||||||| || ||||||||| ||||||
Sbjct 54 ---CT-T-TCTCTCTCGAGATCGGTCGACATTTTTCTCTG-AAGCTCTCTTCTATCTTTA 107
Query 119 CGAATCCCGATATGAGCCACGGGTGGTTATGGTTATGAATAATCCTGCAAACAACAACCC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 CGAATCCCGATATGAGCCACGGGTGGTTATGGTTATGAATAATCCTGCAAACAACAACCC 167
Query 179 AGTAGCAGCGTCTTCAGCGTCAGCCGTAGCTTTAGCTCCGCCGCCACATCCGCCGCAGCC 238
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AGTTGCAGCG--TT----GTCAGCCGTAGCTTTAGCTCCGCCGCCACATCCGCCGCAGCC 221
Query 239 TCACCGTCCTTCTACTTCCTGTGATCGTCACCCGGATGAGCGTTTCACCGGATTTTGCCC 298
|||||||||||| || |||||||||||||||||||| || | |||||||||||||||||
Sbjct 222 TCACCGTCCTTCCACCTCCTGTGATCGTCACCCGGACGAAAGATTCACCGGATTTTGCCC 281
Query 299 TTCTTGTCTCTTTGACCGTCTCTCTGTTCTAGACATCACCGGAAAAAACAACAACGCCGT 358
|||||||||||| ||||||||||||||||||||||||||||| | || ||||||||
Sbjct 282 TTCTTGTCTCTTCGACCGTCTCTCTGTTCTAGACATCACCGG-----A-AAGAACGCCGT 335
Query 359 CGCGTCTTCTTCTAAGAAACCACCGTCTTCTTCCGCCGCTCTTAAAGCAATCTTCAAACC 418
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 336 CGCGTCTTCTTCAAAGAAACCACCGTCGTCTTCCGCCGCTCTTAAAGCAATCTTCAAGCC 395
Query 419 CTCTTCCTCCTCCGGTTCGTTCTTCCCGGAACTTCGGAGGACGAAATCGTTTTCAGC-AT 477
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 396 CTCTTCCTCCTCCGGGTCGTTGTTCCCGGAACTTCGGAGGACGAAATCGTTTTCGGCGA- 454
Query 478 CAAAGGCTGAAGCTTTTTCTCTAGGTGCGTTTGAGCCACAGAGAAGATCCTGTGATGTTA 537
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 455 CAAAGGCTGAAGCTTTTTCTTTGGGTGCGTTTGAGCCACAGAGAAGATCCTGTGATGTTA 514
Query 538 GGGTTAGGAACACTCTTTGGTCTCTGTTTCACGAAGACGCCGAGCATAATTCTCAAACCA 597
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GAGTTAGGAACACTCTCTGGTCTCTGTTTCACGAAGACGCCGAGCATAATTCTCAAACCA 574
Query 598 AAGAGGGTTTATCAGTAAATTGCAGTGAGATTGATCTCGAACGCATCAATTCAATAGTAA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 575 AAGAGGGTTTATCAGTAAATTGCAGTGAGATTGATCTCGAACGCATCAATTCCATTGTAA 634
Query 658 AGTCTCCTGTTTTCGAGGAGGAAACTGA-AATTGAAAGTGAGCAAGACAACGAGAAAGAC 716
|||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 635 AGTCGCCTGTTTTCGAGGAGGAAACT-ATAATTGAAAGTGAGCAAGACAACGAGGAAGAC 693
Query 717 ATAAAGTTTGAGACTTTCAAGGAACCCAGAAGTGTAATCGACGAAATCGTTgaagaagaa 776
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 694 ATAAATTTTGGGACTTTCAAAGAACCCAGAAGTGTAATCGACGAAATCGTTGAAGAAGAA 753
Query 777 gaagaagaggaaacgaagaaagTTGAGGACTTT-ACAATGGAGTTTAATCCACAGACAAC 835
||||||||||| ||||||||||||||||||||| | |||||| ||||||| ||| ||
Sbjct 754 GAAGAAGAGGAGACGAAGAAAGTTGAGGACTTTGA-AATGGAAATTAATCCTCAG---AC 809
Query 836 GGCGAAGAAGACGAACAGAGACTTCAAAGAGATTGCAGGGAGTTTCTGGTCAGCGGCGTC 895
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 810 GACGAAGAAGACGAACAGAGACTTCAAAGAGATTGCAGGGAGTTTCTGGTCGGCGGCGTC 869
Query 896 AGTATTCAGCAAGAAATTGCAGAAATGGAGACAAAAGCAGAAGCTTAAGAAGCATAGAAC 955
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 870 AGTATTCAGCAAGAAATTGCAGAAATGGCGACAAAAGCAGAAGCTTAAGAAGCATAGAAC 929
Query 956 CGGAAATCTCGGAGCCGGATCCTCTGCTTTACCGGTGGAGAAGGCAATCGGGAGACAACT 1015
||| | ||||||||| |||| ||||||||||||||| |||| |||||||| ||
Sbjct 930 CGG------C---GCCGGATCCGCTGCGTTACCGGTGGAGAAGTCAATTGGGAGACAGCT 980
Query 1016 TAGAGATACTCAATCTGAAATCGCTGAGTATGGTTACGGAAGGAGATCGTGTGATACAGA 1075
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 981 TAGAGATACTCAATCTGAAATCGCTGAGTATGGTTACGGACGGAGATCGTGTGATACAGA 1040
Query 1076 TCCAAGATTCTCAATTGACGCTGGAAGATTCTCGCTTGATGCTGGTAGGGTTTCGGTTGA 1135
||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| || ||
Sbjct 1041 TCCAAGATTCTCAATCGACGCCGGAAGATTCTCGCTTGACGCCGGTAGGGTTTCTGTGGA 1100
Query 1136 TGACCCTCGTTACTCTTTTGAGGAGCCACGCGCTTCGTGGGATGGATATTTGATTGGAAG 1195
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1101 CGACCCTCGTTACTCTTTTGAGGAGCCACGAGCTTCTTGGGATGGATATTTGATCGGAAG 1160
Query 1196 AGCTGCTGCTCCGATGCGAATGCCGTCGATGTTATCTGTAGTGGAAGATTCTCCGGTTCG 1255
| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AACGGCTGCTCCGCCGCGAATGCCGTCGATGTTATCTGTAGTGGAAGATTCTCCGGTTCG 1220
Query 1256 GAATCATGTTCACCGGTCAGATACTCACATTCCGGTGGAAAAGTCACCACAAGTATCA-G 1314
||||||||| | ||||||||||||| ||||||||||||||| |||||| |||| || |
Sbjct 1221 TAATCATGTTTTCAGGTCAGATACTCAGATTCCGGTGGAAAAGCCACCACCAGTACCAGG 1280
Query 1315 AAGCTGTGATTGATGAGATTGTTCCTGGTGGATCTGCACAGACCAGAGAGTATTACTTAG 1374
| | ||| | ||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1281 ACG-TGTAAATGAGGAGATTGTTCCTGGTGGATCTGCACAGACCCGAGAGTACTACTTAG 1339
Query 1375 ACTCATCATCTTCACGAAGGAGGAAGAGCCTTGACCGTTCTAGCTCCACTAGGAAGTTAT 1434
| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1340 A--C-TCATCTTCACGACGGAGGAAGAGCCTTGACCGTTCTAGCTCCACTAGGAAGATAT 1396
Query 1435 CAGCCTCTGTCATGGCTGAAATTGATGAACTAAAGCTGACTCAAGACAGAGAGGCTAAAG 1494
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1397 CAGCCTCTGTCATGGCGGAAATTGATGAACTAAAACTGACTCAAGACAGAGAGGCTGAAG 1456
Query 1495 ACTTGGTTTCACATTCGAATTCACTGAGAGACGATTGTTGCTCTGTTGAGAACAACTAT- 1553
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1457 ACTTGATTTCACATTCGAATTCACTGAGAGACGATTGTTGCTCAGTTGAGAACAACT-TC 1515
Query 1554 GAGATGGGTGTTAGAGAAAATGTAGGGACTATAGAATGCAACAAGAAGAGGACGAAGAAA 1613
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1516 GAGATGGGTGTTAGAGACAATGCAGGGACTATAGAATGCAACAAGAAGAGGACGAAGAAA 1575
Query 1614 TCTCGATGGAGTTGGAACATATTCGGGTTGCTTCATCGAAAAAACGGGAACAAATACG-A 1672
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 1576 TCTCGATGGAGTTGGAACATATTCGGGCTGCTTCATCGGAAAAACGGGAACAAATACGAA 1635
Query 1673 G--GAAGAAGAAAGAAGAAGCGGTGTGGATAGAACGTTTTCGGGGTCGTGGAATGTAGAA 1730
| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1636 GAAGAAGAAGAACGAAGAAGCGGTGTGGATAGAACGTTTTCGGGATCGTGGAATGTAGAA 1695
Query 1731 CCGAGGAACGGGTTTGATCCGAAGATGATTAGGAGCAATAGTAGTGTGAGTTGGAGAAGT 1790
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TCGAGAAACGGGTTTGATCCGAAGATGATTAGGAGCAATAGTAGTGTGAGTTGGAGAAGT 1755
Query 1791 TCCGGAACCACTGGAGGAGGGT-TGCAACGGAATAGTGTGGATGGATACATTAGTGGGAA 1849
|| || ||||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1756 TCTGGTACCACAGGAGGAGGGTAT-CAACGGAATAGTGTGGATGGATACATTAGTGGGAA 1814
Query 1850 GAAGAAAGTTAGTAAGGCTGAGAATGGAATGCTCAAGTTTTACTTGACACCGGGTAAAGG 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GAAGAAAGTTAGTAAGGCTGAGAATGGAATGCTCAAGTTTTACTTGACACCGGGTAAAGG 1874
Query 1910 AAGGCGAAGAGGAAGCGGCAATTCGACCGCACCGACAAGCCGGCCTGTTCCGGCTTCTCA 1969
||||||||||||||||||||||||| |||||||||||| |||||| || |||| ||||||
Sbjct 1875 AAGGCGAAGAGGAAGCGGCAATTCGGCCGCACCGACAAACCGGCCGGTACCGGGTTCTCA 1934
Query 1970 ACCTTTTGGTAGTAGAAATGTTATGAACTTTTACTAACAACATTGTAATGAGCTCGAGTC 2029
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1935 ACCGTTTGGTAGTAGAAATGTTATGAACTTTTACTGACAACATTGTAATGAGCTCGAATC 1994
Query 2030 TTCTTTTTAGATGTAGTTGGAATAA-TGTG-TGATGAAGTTGCATTGACAGAAAATGTTC 2087
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 1995 TTCTCTTTAGATGTAGTTGGAATAAGTGTGATGATGAAGTTGCATTGACAGAAAATGTAC 2054
Query 2088 AAAGATTTACATAttttttttGGGTTCAATCTGATTCTTGTGTTGGGATTTGATTTTGC- 2146
|||||||| | |||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 2055 AAAGATTTTTTTTTTTTTTTTGGGTTCAATCTGATTCTTGTATGGGGATTTGATT--GCT 2112
Query 2147 CAATTTTAGAAATTTGTAGTTCAAAGTGTTAATCCATCTTCTTTGGTCATGAATGTAT 2204
||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2113 CAAATTTAGAAACTTGTAGTTCAAAGTGTTAATCAATCTTCTTTGGTCATGAATGTAT 2170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82960553610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5