BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G38080.1
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482815 jgi|Araly1|482815|fgenesh2_kg.4__1875__AT2G38080.1 3114 0.0
> Ahg482815 jgi|Araly1|482815|fgenesh2_kg.4__1875__AT2G38080.1
Length=2005
Score = 3114 bits (1686), Expect = 0.0
Identities = 1905/2011 (95%), Gaps = 14/2011 (1%)
Strand=Plus/Plus
Query 4 aaacagagagaaaaagactaaaaacacagtttaagaagaaggagagatagagagagaaga 63
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 2 AAACAGAGAGAAAAAGACTAAAAACACAGCTTAAGAAGAAGAAGAGATAGAGAAAG-CGA 60
Query 64 gaaagatagagagggagaTGGGGTCTCATATGGTTTGGTTTCTATTTCTTGTATCCTTCT 123
| |||| | |||| ||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 61 G-AAGA-A-AGAGAGAGATGGGG--T-ATATGGTTTGGTTTCTATTTCTTATATCCTTCT 114
Query 124 TCTCTGTGTTCCCAGCTCCATCTGAGAGCATGGTTCGCCACTACAAGTTTAACGTTGTAA 183
||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
Sbjct 115 TCTTTGTGTTCCCAGCTCCATCCGAGAGCATGATTCGCCATTACAAGTTTAACGTTGTGA 174
Query 184 TGAAGAACGTGACTAGATTATGCTCAAGCAAGCCAACCGTGACCGTCAACGGTAGATATC 243
|||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 175 TGAAGAACACAACAAGACTATGCTCAAGCAAGCCAATCGTGACCGTCAACGGTAGATATC 234
Query 244 CAGGTCCCACAATCTACGCACGAGAAGATGACACGTTGCTCATCAAAGTCGTTAATCACG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGGTCCCACAATCTACGCACGAGAAGATGACACGTTGCTCATCAAAGTCGTTAATCACG 294
Query 304 TCAAGTACAACGTCTCCATCCACTGGCACGGTGTGAGACAAGTGAGAACGGGATGGGCTG 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCAAGTACAACCTCTCCATCCACTGGCACGGTGTGAGACAAGTGAGAACGGGATGGGCTG 354
Query 364 ATGGGCCTGCTTACATAACTCAGTGCCCGATCCAGCCTGGTCAAGTCTACACATACAACT 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 ATGGGCCTGCTTACATAACTCAGTGCCCGATCCAGCCTGGTCAAGTCTACACATACAATT 414
Query 424 ACACTTTGACCGGCCAACGCGGAACGCTCTGGTGGCACGCTCATATCCTCTGGCTCCGAG 483
| || ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 415 ATACCTTGACTGGCCAACGAGGAACGCTTTGGTGGCATGCTCATATCCTCTGGCTCCGAG 474
Query 484 CCACTGTTTACGGTGCATTGGTCATCCTTCCCAAACGCGGTGTTCCCTATCCTTTCCCCA 543
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CAACGGTTTACGGTGCGTTGGTCATCCTTCCCAAACGCGGTGTTCCCTATCCTTTCCCCA 534
Query 544 AACCCGACAATGAGAAAGTCATCGTTCTAGGTGAATGGTGGAAATCGGATACTGAAAATA 603
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 535 AACCCGACCATGAGAAAGTCATCGTTCTAGGTGAATGGTGGAAATCGGATACCGAAAACA 594
Query 604 TTATTAATGAGGCGCTTAAGTCTGGATTAGCCCCTAATGTCTCTGACTCTCACATGATCA 663
| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 595 TCATTAACGAGGCGCTTAAGTCTGGATTAGCCCCTAATGTCTCGGACGCTCACATGATCA 654
Query 664 ACGGACACCCAGGCCCAGTTAGAAACTGTCCATCTCAAGGTTACAAACTGTCAGTAGAGA 723
|||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 655 ACGGACACCCAGGCCCTGTTAAAAATTGTCCATCTCAAGGTTACAAACTGTCGGTAGAGA 714
Query 724 ATGGCAAAACCTATCTGCTACGACTAGTCAACGCTGCACTTAATGAAGAACTCTTTTTCA 783
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 715 ATGGCAAAACCTATCTTCTACGACTAGTCAATGCTGCACTTAATGAAGAGCTCTTTTTCA 774
Query 784 AAGTCGCCGGCCATATTTTCACGGTGGTAGAAGTAGACGCAGTCTATGTTAAACCGTTCA 843
|||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |
Sbjct 775 AAGTCGCCGGCCATATTTTCACGGTGGTCGAAGTCGACGCGGTCTACGTTAAACCGTTTA 834
Query 844 AGACCGACACCGTCCTTATAGCCCCCGGTCAAACCACCAACGTCCTCCTAACCGCCTCAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGACCGACACCGTCCTTATAGCCCCCGGTCAAACCACCAACGTCCTCCTAACCGCCTCAA 894
Query 904 AATCCGCCGGGAAATACCTTGTAACCGCTTCTCCTTTCATGGACGCCCCAATCGCGGTGG 963
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 895 AATCTGCCGGGAAATACCTTGTAACGGCTTCTCCTTTCATGGACGCCCCAATCGCTGTGG 954
Query 964 ACAACGTAACCGCCACCGCAACTGTTCATTACTCGGGAACACTCTCCTCCTCCCCAACAA 1023
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 955 ACAACGTAACCGCCACCGCAACCGTTCATTACTCCGGAACACTCTCCTCCTCCCCAACAA 1014
Query 1024 TCCTCACCCTTCCTCCCCCGCAAAACGCTACTTCCATAGCCAACAACTTCACAAACTCTC 1083
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1015 TCCTCACCCTCCCTCCGCCGCAAAACGCTACTTCCATCGCCAACAACTTCACAAAGTCTC 1074
Query 1084 TTCGTAGTCTCAACTCCAAGAAGTACCCTGCTCTTGTCCCGACCACCATCGACCACCACC 1143
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 TTCGTAGTCTCAACTCCAAGAAGTACCCTGCCCTTGTCCCGACCACCATCGACCACCACC 1134
Query 1144 TCTTCTTCACCGTCGGCCTTGGGCTAAACGCATGCCCTACTTGCAAGGCCGGAAACGGAA 1203
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCTTCTTCACCGTCGGTCTTGGGCTAAACGCATGCCCTACTTGCAAGGCCGGAAACGGAA 1194
Query 1204 GCCGTGTCGTGGCTAGCATCAACAATGTAACCTTCATTATGCCTAAAACCGCTTTGCTCC 1263
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1195 GCCGTGTCGTGGCCAGCATCAACAATGTAACCTTCATTATGCCCAAAACCGCTTTGCTCC 1254
Query 1264 CGGCTCATTACTTCAACACAAGTGGAGTTTTCACGACAGACTTTCCCAAGAATCCACCAC 1323
| ||||||||||||||||||||||||||||||||||| || ||||| || || |||||||
Sbjct 1255 CAGCTCATTACTTCAACACAAGTGGAGTTTTCACGACGGATTTTCCTAAAAACCCACCAC 1314
Query 1324 ACGTTTTCAACTACAGCGGAGGATCAGTCACGAACATGGCCACAGAAACCGGCACAAGGC 1383
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1315 ACGTTTTTAACTACAGCGGAGGATCAGTCACGAACATGGCCACAGAAACCGGCACCAGGC 1374
Query 1384 TCTACAAGCTACCGTATAACGCCACTGTTCAGCTTGTCCTTCAAGATACCGGCGTCATAG 1443
| |||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||
Sbjct 1375 TATACAAGCTACCGTACAACGCCACGGTTCAGCTGGTCCTCCAAGATACTGGCGTCATAT 1434
Query 1444 CGCCAGAGAACCATCCAGTACATCTTCACGGTTTTAACTTTTTTGAAGTCGGTCGTGGAT 1503
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1435 CGCCTGAGAACCATCCAGTGCATCTTCACGGTTTTAACTTTTTCGAAGTCGGTCGTGGAT 1494
Query 1504 TAGGTAACTTCAACTCCACGAAAGACCCAAAAAACTTCAATTTGGTAGATCCGGTTGAGA 1563
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1495 TAGGTAACTTCAACTCCACGAAAGACCCAAAAAACTTCAACTTGATCGATCCGGTTGAGA 1554
Query 1564 GGAACACAATCGGAGTTCCATCCGGTGGATGGGTCGTCATCAGATTCAGAGCAGATAATC 1623
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGAACACAATCGGAGTTCCATCTGGTGGATGGGTCGTCATCAGATTCAGAGCAGATAATC 1614
Query 1624 CCGGGGTTTGGTTCATGCATTGTCACTTGGAGGTACACACGACGTGGGGATTAAAGATGG 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CCGGGGTTTGGTTCATGCATTGTCACTTGGAGGTACACACGACGTGGGGATTAAAGATGG 1674
Query 1684 CTTTCTTGGTGGAGAACGGCAAAGGACCCAATCAGTCGATTTTGCCGCCGCCTAAGGATC 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTTTCTTGGTGGAGAACGGCAAAGGACCCAATCAGTCGATTTTGCCGCCGCCTAAGGATC 1734
Query 1744 TTCCCAAGTGCTAAGTCCTGCAACTAAATAGGGCGACATATCAACATCACGCCACGTCCA 1803
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1735 TTCCCAAGTGTTAAGTCCTGCAACTAAACAAGGCGACATATCAACATCACGCCACGTCCA 1794
Query 1804 AGAAGACTAATGAGTGGTGATTTAATGCGTGGATTTGGCTAACAAATTGTAtttttttGA 1863
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1795 AGAAGACTAATGAGTGGTGAATTAATGCGTGGATTTGGTTAACAAATTGTATTTTTTTGA 1854
Query 1864 GCAAAGCAAAAGGTTCGGttttttttGCTCATGTCAAAAGTTTGAATAATGGAGAAAAAA 1923
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1855 GCAAAGCAAAAGGTTCGATTTTTTT-GCTCATGTCAAAAGTTTGAATAATGGAGAAAAAA 1913
Query 1924 -GAGcattgtattataataatttgttttcat--t-atattcaaattccattcatattttt 1979
||||| |||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 1914 AGAGCACTGTATTATAATAATTTTTTTTTATCATGATATTCAAATTCCATTCATATTTT- 1972
Query 1980 tattattGTCTCTAACACACCTCTTATATGG 2010
|||||||||||| |||||||||||||||||
Sbjct 1973 -ATTATTGTCTCTCACACACCTCTTATATGG 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75990038775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5